Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03263 and BPUM_1923

See Amino acid alignment / Visit BSNT_03263 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:44
# Commandline: needle
#    -asequence dna-align/BSNT_03263___ypgR.1.24716.seq
#    -bsequence dna-align/BPUM_1923___ypgR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03263___ypgR-BPUM_1923___ypgR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03263___ypgR-BPUM_1923___ypgR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03263___ypgR
# 2: BPUM_1923___ypgR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1188
# Identity:     818/1188 (68.9%)
# Similarity:   818/1188 (68.9%)
# Gaps:         105/1188 ( 8.8%)
# Score: 2683.0
# 
#
#=======================================

BSNT_03263___      1 ATGAAGATAAAATCAATTGAACCTACACCAAGCCCGAATACAATGAAAGT     50
                     |||||.||||.|.|.||.|||||.||.|||||.||.|||||.|||||.||
BPUM_1923___y      1 ATGAAAATAACAGCGATAGAACCGACGCCAAGTCCAAATACGATGAAGGT     50

BSNT_03263___     51 CATCTTAACGGAAGAGCTT-CCGGCGGGCAAAAGCAATAACTATAAACCT     99
                     |||.||.||.||||.|||| ||||| ||.||||||||.|||||.|||...
BPUM_1923___y     51 CATTTTGACAGAAGCGCTTGCCGGC-GGTAAAAGCAACAACTACAAAAAG     99

BSNT_03263___    100 GAGCAAGCAGAAGGCGCACCGCCTGTTATAGAGGA-------AATTCTTA    142
                     ||.|||..|||||..||.||       |.|||.||       .||| |||
BPUM_1923___y    100 GATCAAAAAGAAGAAGCGCC-------AGAGATGATTAAACGTATT-TTA    141

BSNT_03263___    143 AA-ATAGATGGAGTTAAAGGGGTATATCACGTCGCAGATTTTCTT-GCTG    190
                     || ||.||.||.||.|||||.||.|||||.|||||||| |||||| ||.|
BPUM_1923___y    142 AACATTGAAGGTGTAAAAGGTGTTTATCATGTCGCAGA-TTTCTTAGCGG    190

BSNT_03263___    191 TTGAACGGAATGCAAGATACGACTGGAAAGACATATTACCGCAAGTCCGC    240
                     ||||.||.|||||||..|..||||||.|.|.|||.||.|.|||.|||.|.
BPUM_1923___y    191 TTGAGCGTAATGCAAAGTTTGACTGGCAGGGCATTTTGCAGCAGGTCAGA    240

BSNT_03263___    241 ACTGCATTTGGGATGGAAAGTGCTGAAAGC-----GGAGAAGAAAATCG-    284
                     ...||.|||||.....|||   |.|||.||     |||    |..|||| 
BPUM_1923___y    241 GAAGCCTTTGGTCAACAAA---CAGAAGGCCTTCAGGA----AGGATCGC    283

BSNT_03263___    285 -TTCTGATCAAGAATCTTTTGGAGAGGTAAAAGTTTTTGTGCAGATGTTC    333
                      .||||.|...||..|.|||||.||.||.|||||.|||||.||.|||||.
BPUM_1923___y    284 AGTCTGGTGGTGATACATTTGGCGAAGTCAAAGTGTTTGTCCAAATGTTT    333

BSNT_03263___    334 AGCGGCATTCCTATGCAAGTTAAATTAACCGATGGAGAGCGGGAAGAACG    383
                     |..||.|||||.||||||||||||||||||||.||.||..|.|||||.||
BPUM_1923___y    334 AATGGAATTCCGATGCAAGTTAAATTAACCGACGGTGAAAGAGAAGAGCG    383

BSNT_03263___    384 CTTCGGCTTACCTGAACGCTTTC-AGCAGGCGATCTTAAAACTTAGATCT    432
                     .||||||.|.|||||||||||.| |||| ||.||.||||     ||.||.
BPUM_1923___y    384 ATTCGGCATGCCTGAACGCTTCCAAGCA-GCTATTTTAA-----AGCTCA    427

BSNT_03263___    433 GAAGC--TTC---CAATGTTGTGTTTGAGCGGGCTTGGAAAGAACAAGGT    477
                     |||||  |||   ||||||.||.|||||.||.|..|||||||||||.||.
BPUM_1923___y    428 GAAGCAGTTCAGACAATGTCGTATTTGAACGTGTGTGGAAAGAACATGGC    477

BSNT_03263___    478 GTCAGATTCGGTGACTTTGATGAAATCGGCCATGACGTGACAGAAGAGCT    527
                     ||..|.||.||||||||||..||.||.|||||.||.||.|.|||||||||
BPUM_1923___y    478 GTTCGTTTTGGTGACTTTGCAGATATTGGCCAAGAAGTCAGAGAAGAGCT    527

BSNT_03263___    528 TCAGGCGGCATACAGTGATGAACG------------GCTGAAACGACTGA    565
                     .|||||.||.||   |||.| |||            |||        |.|
BPUM_1923___y    528 GCAGGCAGCCTA---TGACG-ACGAGCGTTTAGCCCGCT--------TAA    565

BSNT_03263___    566 CTGAAGCAGCCGCTCAAGGAAAGGGCGAAGCAAAACAAACTGT------A    609
                     |.||||    ||.||||        .||||.|.||.||.||||      |
BPUM_1923___y    566 CAGAAG----CGGTCAA--------AGAAGGACAAGAAGCTGTAGATCGA    603

BSNT_03263___    610 CAG------CGCAAAGCGTATAAAGTAACGCTTGACATGCTGGATGATGA    653
                     |||      ||.||.||.|||.|.|||||....||.||||||...||.||
BPUM_1923___y    604 CAGGTGAACCGAAAGGCATATGATGTAACAGAAGATATGCTGCGCGAGGA    653

BSNT_03263___    654 GGACTGGAAAAAGCGTTATGCACACTTGGAACAGATGGATCCGAAAGAAG    703
                     .||||||||||||||||.|||.||.||.||.||.|||.|.||..||.||.
BPUM_1923___y    654 AGACTGGAAAAAGCGTTTTGCCCATTTAGAGCAAATGCAGCCAGAACAAA    703

BSNT_03263___    704 AGGATATCCCGGTTTTACAGAAGGCATTGGATGATCCAAAGGTGTCCATC    753
                     ||||||||||.||||||..|||.|||.||||.||.||.||....|||||.
BPUM_1923___y    704 AGGATATCCCTGTTTTAATGAAAGCAATGGAAGACCCTAAAACATCCATT    753

BSNT_03263___    754 AGAAGACAGGCTGTTGTG--TACTTAGGGATGATTGAAACACCTGATGTT    801
                     .|.||.||.|||||||||  |.||  ||.|||||||||...||||.|.||
BPUM_1923___y    754 CGCAGGCAAGCTGTTGTGAATGCT--GGAATGATTGAAGATCCTGCTATT    801

BSNT_03263___    802 CTTCCTCTATTGTATAAAGCACTTGAGGACAAAGCTGTATCAGTCAGAAG    851
                     .|.|||.|..|.|||||||..|||.|.||||||.|.||..|||||.|.||
BPUM_1923___y    802 TTGCCTATTCTATATAAAGGGCTTAAAGACAAAACAGTGACAGTCCGCAG    851

BSNT_03263___    852 AACGGCCGGAGACTGCCTGTCTGATATCGGCGATCCTCAAGCCATTCCCG    901
                     |||.||.|||||||||.|.||.||..|.||.|||||....||.||....|
BPUM_1923___y    852 AACCGCTGGAGACTGCATTTCAGACCTTGGTGATCCGAGCGCTATAGAAG    901

BSNT_03263___    902 CTATGATCAAGTCGTTAAGCGACTCC-AGCAAGCTTGTTCGCTGGCGTGC    950
                     |.|||||..|.||.||||..|| ||| ||.||.|||||||||||||||||
BPUM_1923___y    902 CAATGATTGAATCATTAAAGGA-TCCAAGTAAACTTGTTCGCTGGCGTGC    950

BSNT_03263___    951 GGCCATGTTCCTGTACGAAGTCGGCGATGAAAGTGCAATTGAAGCTTTGC   1000
                     .||.|||||.||.||.||||..||.||.||||..|||.||||.||.||..
BPUM_1923___y    951 AGCGATGTTTCTTTATGAAGAAGGTGACGAAACAGCACTTGACGCATTAA   1000

BSNT_03263___   1001 GCGCTGCCGAAGATGACCCCGAATTTGAGGTCAGCCTTCAAGTCAAAATG   1050
                     ..|..||.||..|.|||||.||||||||.||||||||||||||.||||||
BPUM_1923___y   1001 AAGAAGCTGAGCAAGACCCTGAATTTGAAGTCAGCCTTCAAGTGAAAATG   1050

BSNT_03263___   1051 GCGCTTGAACGTATTGAGCATGGAGAAGAAGCAAAAGGTTCTGTTTGGAA   1100
                     ||..||||.|||||||||||.|||||||||||.|||||.||.||.|||||
BPUM_1923___y   1051 GCAATTGAGCGTATTGAGCACGGAGAAGAAGCGAAAGGCTCAGTATGGAA   1100

BSNT_03263___   1101 ACAAATGACGGAAAGCAGAAAAAAAGGC----GAATAA   1134
                     .||||||||.|||||.|| ||||||.||    ||||.|
BPUM_1923___y   1101 GCAAATGACAGAAAGTAG-AAAAAATGCATCAGAATGA   1137


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.