Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03269 and BPUM_1928
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:45
# Commandline: needle
# -asequence dna-align/BSNT_03269___ugtP.1.24716.seq
# -bsequence dna-align/BPUM_1928___ugtP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03269___ugtP-BPUM_1928___ugtP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03269___ugtP-BPUM_1928___ugtP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03269___ugtP
# 2: BPUM_1928___ugtP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1197
# Identity: 854/1197 (71.3%)
# Similarity: 854/1197 (71.3%)
# Gaps: 93/1197 ( 7.8%)
# Score: 2929.0
#
#
#=======================================
BSNT_03269___ 1 TTGAATACCAATAAAAGAGTATTAATTTTGACTGCAAATTACGGAAATGG 50
||||||||||||||||.|.|||||||.|||||.||||||||.||||||||
BPUM_1928___u 1 TTGAATACCAATAAAAAAATATTAATCTTGACCGCAAATTATGGAAATGG 50
BSNT_03269___ 51 ACATGTGCAGGTAGCCAAAACACTTTATGAACAATGTGTACGGCTC---- 96
||||.|||||||.||.||||||||.|||| |||.||.|...||
BPUM_1928___u 51 ACATATGCAGGTGGCTAAAACACTGTATG----ATGAGTGCAAATCCCAA 96
BSNT_03269___ 97 GGCTTTCAGCATGTAACAGTTTCTAATTTGTACCAAGAGTCAAATCCGAT 146
||.|||.|||||||...|||||||||||||||.|||||.||||||||.||
BPUM_1928___u 97 GGGTTTGAGCATGTTGTAGTTTCTAATTTGTATCAAGAATCAAATCCCAT 146
BSNT_03269___ 147 TGTTTCAGAGGTAACTCAATACCTTTAT--TTAAAAAGCTTCTCAATCGG 194
|||.||.||.||.|||||||| ||||| ||.||.|||||.||.||.||
BPUM_1928___u 147 TGTGTCGGAAGTGACTCAATA--TTTATACTTGAAGAGCTTTTCCATTGG 194
BSNT_03269___ 195 GAAACAGTTTTATCGTTTGTTTTATTACGGAGTTGACAAAATCTATAATA 244
||||||.||||||||.||||||||||||||.||.||.|||||.||.||||
BPUM_1928___u 195 GAAACAATTTTATCGCTTGTTTTATTACGGTGTAGATAAAATTTACAATA 244
BSNT_03269___ 245 AACGTAAATTCAATATTTACTTTAAA-ATGGGTAATAAAAGATTGGGCGA 293
||||.|||||.||.||||| |||||| |||||.|||||..|..|.|..||
BPUM_1928___u 245 AACGCAAATTTAACATTTA-TTTAAAGATGGGAAATAAGCGTCTTGATGA 293
BSNT_03269___ 294 ACTT-GTCGATGA-ACATCAGCCCGATATTATTATTAATACATTTCCGAT 341
|||| .||.||.| ||| |.||.|||||.|||||||.||||||.||.||
BPUM_1928___u 294 ACTTATTCAATTACACA--ATCCAGATATCATTATTATTACATTCCCAAT 341
BSNT_03269___ 342 GATCGTCGTGCCGGAATACAGACGCCGAACTGGAAGAGTCATTCCTACCT 391
|||.||.||.||.||||||.||..|..|||.||||.|.||||.||.||.|
BPUM_1928___u 342 GATTGTTGTTCCTGAATACCGAAACAAAACAGGAAAAATCATCCCGACAT 391
BSNT_03269___ 392 TCAACGTTATGACTGATTTTTGTCTTCATAAAATTTGGGTTCACGAAAAC 441
|.||.||.|||||.|||||||||||||||||.||||||||.||.||||||
BPUM_1928___u 392 TTAATGTGATGACAGATTTTTGTCTTCATAAGATTTGGGTACATGAAAAC 441
BSNT_03269___ 442 GTGGATAAATATTATGTGGCGACAGATTACGTGAAGGAAAAACTGCTGGA 491
.|.||....||.|||||.||.||.|||||.|||||..|||||.|..||||
BPUM_1928___u 442 ATCGACCGGTACTATGTTGCAACCGATTATGTGAAACAAAAATTAGTGGA 491
BSNT_03269___ 492 GATCGGCACTCATCCAAGCAATGTAAAAATCACAGGAATTCCAATCAGGC 541
.||||||||.|||||||||.||||.|||.|.|||||.|||||.||.||.|
BPUM_1928___u 492 AATCGGCACACATCCAAGCGATGTCAAAGTGACAGGCATTCCTATTAGAC 541
BSNT_03269___ 542 CGCAATTTGAAGAATCCATGC------CGGTTGGCCCGATATATAAAAAG 585
|.||||||||||.|..|.||| || ..|||.||||||||.
BPUM_1928___u 542 CACAATTTGAAGCAGACGTGCCAAAATCG------AAGATTTATAAAAAA 585
BSNT_03269___ 586 TA-CAATCTTTCACCAAACAAAAAAGTGCTTCTGATCATGGCAGGTGCCC 634
|| ..|| |.|||.|||||||||||||.||||||||.|||||.|||||.|
BPUM_1928___u 586 TATGGAT-TATCATCAAACAAAAAAGTTCTTCTGATTATGGCCGGTGCTC 634
BSNT_03269___ 635 ACGGTGTATTAAAGAACGTAAAAGAGCTGTGCGAAAACCTTG--TCAAGG 682
|.||||||.|.||.||.||.||.||..|.||.| ||.|.||| ||.|
BPUM_1928___u 635 ATGGTGTACTGAAAAATGTCAAGGAATTATGTG-AAGCATTGCTTCTA-- 681
BSNT_03269___ 683 ATGAC---CAAGTGCAAGTGGTTGTCGTGTGCGGGAAAAATACGGCTTTA 729
||| .||||.|||.|.|||||.||.||.||.||.||..|.||..|.
BPUM_1928___u 682 --GACAGTGAAGTACAAATTGTTGTTGTATGTGGAAAGAACGCAGCGCTG 729
BSNT_03269___ 730 AAAGAATCTTTGAGTGCGCTTGAGGCGGAAAATGGTGACA---------- 769
|||.||||..|.||.|..||||| |.|| |||
BPUM_1928___u 730 AAACAATCACTAAGCGATCTTGA-----ACAA-----ACACATCCAGATC 769
BSNT_03269___ 770 AATTAAAAGTTCTGGGCTATGTGGAGCGCATTGATGAGCTAT--TTCGGA 817
||||.||.|..||.||.||||||||.|..|||||||| || |||.||
BPUM_1928___u 770 AATTGAAGGCGCTTGGATATGTGGAACAAATTGATGA---ATTGTTCAGA 816
BSNT_03269___ 818 -TCACAGATTGCATGATTACCAAGCCCGGCGGCATTACTTTGACAGAAGC 866
|.||||||||.|||||.||.||.||.||.|||||||||||.||||||||
BPUM_1928___u 817 GTAACAGATTGTATGATCACAAAACCAGGTGGCATTACTTTAACAGAAGC 866
BSNT_03269___ 867 CACAGCCATTGGAGTGCCTGTCATTCTGTACAAACCCGTGCCTGGCCAGG 916
.|||||..|.||.||.||.||||||||.|||||.||.||.|||||.||.|
BPUM_1928___u 867 AACAGCACTCGGTGTCCCAGTCATTCTTTACAAGCCTGTCCCTGGACAAG 916
BSNT_03269___ 917 AAAAAGAAAATGCAAACTTCTTTGAAGACCGCGGAGCTGCCATCGTTGTG 966
||||.||||||||..|.||||||||.||....||.||.||||||||..|.
BPUM_1928___u 917 AAAAGGAAAATGCTCATTTCTTTGAGGATTATGGTGCAGCCATCGTCATC 966
BSNT_03269___ 967 AACCGTCATGAAGAGATTCTCGAATCAGTCACTTCCCTTCTTGC----AG 1012
|||.|.||||||||.|||.|.|||||.||.| ||..||||| ||
BPUM_1928___u 967 AACAGACATGAAGACATTTTAGAATCTGTGA----CCAACTTGCTTCAAG 1012
BSNT_03269___ 1013 ATGAAGATACCTTGCATCGCATGAAGAAAAACATTAAGGACCTTCATTTA 1062
|||||||.|..||..|..|||||||..|||||||.||....|||||.|||
BPUM_1928___u 1013 ATGAAGAAAAGTTAGAAAGCATGAAACAAAACATGAAAAGTCTTCACTTA 1062
BSNT_03269___ 1063 GCAA--ACTCCTCTGAAGTGATTTTAGAGGATATCCTGAAGGAATCAGAA 1110
|| |.||.|||.||...|||||.||.||||||.|..||.|||||||.
BPUM_1928___u 1063 --AAGCATTCTTCTCAAACCATTTTGGAAGATATCGTTGAGCAATCAGAT 1110
BSNT_03269___ 1111 ATGATGACTGCCAAACAAAAAGCCAAAGTGC--------TATCGTAA 1149
.|.||.|| |...||||||| ||.| ||| ||||.|||
BPUM_1928___u 1111 CTCATCAC-GAATAACAAAA---CATA-TGCTCGCGCATTATCATAA 1152
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