Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03301 and BPUM_1950
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_03301___ypsC.1.24716.seq
# -bsequence dna-align/BPUM_1950.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03301___ypsC-BPUM_1950.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03301___ypsC-BPUM_1950.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03301___ypsC
# 2: BPUM_1950
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1180
# Identity: 872/1180 (73.9%)
# Similarity: 872/1180 (73.9%)
# Gaps: 47/1180 ( 4.0%)
# Score: 3140.5
#
#
#=======================================
BSNT_03301___ 1 ATGAAGAAGTATACACTAATTGCAACGGCGCCGATGGGCATTGAAGCTGT 50
|||||.|..||||||||.||.||||||||.||.|||||.||||||||..|
BPUM_1950 1 ATGAAAACCTATACACTTATCGCAACGGCTCCAATGGGGATTGAAGCGAT 50
BSNT_03301___ 51 TGTCGCAAAGGAAGTACGAGATTTAGGATACGAATGCAAGGTTGATAACG 100
|||.|||||.||||||.||||..|.||.|||||.||||..||.||.||.|
BPUM_1950 51 TGTTGCAAAAGAAGTAAGAGACCTTGGCTACGACTGCACAGTAGACAATG 100
BSNT_03301___ 101 GGAAAGTTATTTTTGAAGGTGATGCACTTGCCATCTGCCGTGCGAACCTT 150
|.|||||.|||||||||||.||.||.|||||.||.|||||||||||||||
BPUM_1950 101 GAAAAGTAATTTTTGAAGGGGACGCTCTTGCGATTTGCCGTGCGAACCTT 150
BSNT_03301___ 151 TGGCTTAGAACAGCCGACCGCATAAAGGTTCAGGTTGCTTCTTTTAAAGC 200
|||||..|.|||||.|||||.||||||||.||.||.|||...|||...||
BPUM_1950 151 TGGCTGCGTACAGCAGACCGAATAAAGGTACAAGTCGCTGAATTTTCGGC 200
BSNT_03301___ 201 GAAAACATTTGATGAACTGTTTGAAAAAACGAAAGCGATTAACTGGCGCT 250
.||||||||.|||||.|||||||||...||.||.||||||.||||| |||
BPUM_1950 201 AAAAACATTCGATGAGCTGTTTGAACGCACAAAGGCGATTGACTGG-GCT 249
BSNT_03301___ 251 -CATTTATACCTGAAAACGGGAAATTCCCTGTCATCGGAAAATCGGTAAA 299
|||||.||||..|||||.|.|..|||||.||||||||.|||||.||.||
BPUM_1950 250 GCATTTTTACCAAAAAACAGCACGTTCCCAGTCATCGGTAAATCTGTGAA 299
BSNT_03301___ 300 ATCAACA-CTTGCAAGCGTCCCCGACTGTCAGCGGATCGTCAAAAAAGCA 348
||| ||| |||||.||.||.||.||.||.|||||.|||||||||||.||.
BPUM_1950 300 ATC-ACAGCTTGCCAGTGTGCCGGATTGCCAGCGTATCGTCAAAAAGGCG 348
BSNT_03301___ 349 ATTGTTGAAAAGCT------------CAAGCTGCAGTCCGGCAAAGCCAA 386
||.|...||||||| |||..|.|||||
BPUM_1950 349 ATCGCGCAAAAGCTTATATCCTCTTACAACATACAGTC------------ 386
BSNT_03301___ 387 TGATTGGATTGAAGAAACAGGTGCCGAGTATAAAGTGGAAATTTCTTTAT 436
|||.|||.|||||||||||||..|.|||||||||.|.||..||.|..|.|
BPUM_1950 387 TGAATGGCTTGAAGAAACAGGACCTGAGTATAAAATTGAGGTTGCCCTTT 436
BSNT_03301___ 437 TGAAAGATCAGGCTCTGATTACACTGGACTCATCAGGGACGGGCCTTCAC 486
|.||||||.|.|||.|..|.||.||.||..||||.||....||.|||||.
BPUM_1950 437 TAAAAGATAAAGCTGTCCTCACGCTTGATACATCTGGTGTAGGTCTTCAT 486
BSNT_03301___ 487 AAACGAGGATACCGTGTCGATCAGGGCGGTGCGCCGATTAAAGAAACACT 536
|||||.||.|||||..|.|||||.|||||.||.||.|||||||||||.||
BPUM_1950 487 AAACGGGGGTACCGCATGGATCAAGGCGGAGCACCTATTAAAGAAACCCT 536
BSNT_03301___ 537 TGCTGCCGCTTTGGTGCAATTAACCAATTGGACGCCGGACCGCCCGTTTG 586
|||.||.||..|.||||.||||||.||.|||||.||.|||||.|||||||
BPUM_1950 537 TGCGGCTGCACTCGTGCTATTAACGAACTGGACACCTGACCGTCCGTTTG 586
BSNT_03301___ 587 TTGATCCTTTCTGCGGCTCCGGAACAATCGCGATAGAAGCGGCGCTAATC 636
|||||||.||||||||.||.|||||||||||.||.||||||||..|.||.
BPUM_1950 587 TTGATCCCTTCTGCGGATCAGGAACAATCGCTATTGAAGCGGCCATGATT 636
BSNT_03301___ 637 GGCCAAAACATCGCCCCGGGATTCAACCGCGATTTTGTATCAGAGGATTG 686
||.||||||||||||||.||.||.|||||.|||||||..||||||...||
BPUM_1950 637 GGACAAAACATCGCCCCAGGGTTTAACCGAGATTTTGCTTCAGAGTCATG 686
BSNT_03301___ 687 GGAATGGATCGGTAAAGATCTGTGGAACAAAGCGCGGCTTGAAGTCGAAG 736
|||||||||.|||.||||..|.||||||||||||||.|..|||||.||||
BPUM_1950 687 GGAATGGATTGGTGAAGACGTATGGAACAAAGCGCGTCACGAAGTGGAAG 736
BSNT_03301___ 737 AAAAGGCAAATTATGATCAGCCGCTTACA-ATTTTCGCTAGCGACATAGA 785
||||.|||||.||||||||||||| |.|| |||.|.||.||.||.||.||
BPUM_1950 737 AAAAAGCAAACTATGATCAGCCGC-TCCACATTATTGCAAGTGATATCGA 785
BSNT_03301___ 786 CCACCGCATGGTTCAAATCGCAAAAGAAAATGCAGAGGAAGCAGGATTGG 835
||||||.|||.|..|.||.||.|||...|||||.||.|||||||||.|..
BPUM_1950 786 CCACCGGATGATAGACATTGCCAAAATGAATGCGGAAGAAGCAGGACTCA 835
BSNT_03301___ 836 GAGATTTAATCCAGTTTAAGCAGATGCAGGTCAAAGACTTTACCACAAAT 885
|.||.||.||..|||||||.||.|||||.||.|||||||||...|||||.
BPUM_1950 836 GCGAATTGATTGAGTTTAAACAAATGCAAGTGAAAGACTTTCAAACAAAA 885
BSNT_03301___ 886 CTGGAGTTTGGCGTAATTGTCGGCAACCCGCCATATGGAGAGCGTCTCGG 935
.|.||.|..||.||.||||||||.||.|||||.||||||||.||.|||.|
BPUM_1950 886 GTAGATTACGGTGTGATTGTCGGAAATCCGCCTTATGGAGAACGACTCAG 935
BSNT_03301___ 936 CGAGAAAAAAGCCGTTGAGCAGATGTACAAAGAAATGGGGCAGGCGTT-- 983
.||.|||..|||.|||||..|.|||||..|||.||||||..|.||.||
BPUM_1950 936 TGACAAACCAGCTGTTGAAAAAATGTATCAAGGAATGGGCGAAGCATTTA 985
BSNT_03301___ 984 CGAGCCGCTTGATACTTGGTCTGTGTATATGCTGACATCAAATGAAAACT 1033
..||| ||.||.||.|||||..|.|||||..|.||.|||.|.|||||.|
BPUM_1950 986 AAAGC--CTAGACACATGGTCCATTTATATCTTAACGTCACACGAAAAGT 1033
BSNT_03301___ 1034 TTGAGGA-AGCATATGGCAGAAAAGCAACGAAGAAACGAAAACTCTTTAA 1082
|.||.|| .|| |.|||.||||||||||||||.||..|||||||.|||||
BPUM_1950 1034 TCGAAGAGTGC-TTTGGTAGAAAAGCAACGAAAAAGAGAAAACTGTTTAA 1082
BSNT_03301___ 1083 CGGGTTTATTAAAACGGATTATTATCAATACTGGTCAAAAGTAAGGCCGC 1132
.||.|||||||||||.||.|||||.|||||||||..|| ||.||| |
BPUM_1950 1083 TGGTTTTATTAAAACAGACTATTACCAATACTGGGGAA----AACGCC-C 1127
BSNT_03301___ 1133 AGCGTAAGAAAACAGAAAAC----GCATAA 1158
|.| .||||||||||.||| .|||||
BPUM_1950 1128 ACC--TAGAAAACAGACAACTGAATCATAA 1155
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