Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03303 and BPUM_1952
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_03303.1.24716.seq
# -bsequence dna-align/BPUM_1952___ypsA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03303-BPUM_1952___ypsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03303-BPUM_1952___ypsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03303
# 2: BPUM_1952___ypsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 688
# Identity: 426/688 (61.9%)
# Similarity: 426/688 (61.9%)
# Gaps: 110/688 (16.0%)
# Score: 1251.0
#
#
#=======================================
BSNT_03303 1 ATGGAAAACGTGCAGCTTGATGGTGTAAACAATGCAGCACAACAAA-TGG 49
|||.|.|| ||.||||| ||| |.||| |||
BPUM_1952___y 1 ---------GTGGACCT---TGCTGTAA------CAG----ATAAAGTGG 28
BSNT_03303 50 GGCCCACGGG---------AGCCCCATTTTTT-AAAGCAGGTGAAATGAT 89
.|.||| ||.|||.|||||| |||||||||||||..||
BPUM_1952___y 29 ----AATGGGACTTTTATAAGTCCCTTTTTTTAAAAGCAGGTGAAAAAAT 74
BSNT_03303 90 G-AAAGTATTGGCAATAACGGGCTATAAACCGTTTGAACTGGGGATATTT 138
| |||.|||| ||..|.||.||.||.||.||.|||||.||.||.|||||.
BPUM_1952___y 75 GAAAATTATT-GCTGTCACAGGGTACAAGCCATTTGAGCTTGGAATATTC 123
BSNT_03303 139 AAGCAGGATGACAAGGCGCTGTATTACATAAAA--AAAGCCATTAAGAAC 186
||.||.||.||....||.||..|.||||||||| ..||| ||.|.||.
BPUM_1952___y 124 AAACAAGACGAGCCTGCACTTCAATACATAAAAGCGGAGC--TTCAAAAA 171
BSNT_03303 187 CGGCTGATTGCTTTTTTGGATGAAGGATTAGAATGGATTTTAATTTCGGG 236
.||||||..|||||..|.||.||.|||.|.||.|||.||.|.||.||.||
BPUM_1952___y 172 AGGCTGACGGCTTTGATTGAAGATGGACTGGAGTGGGTTCTCATATCAGG 221
BSNT_03303 237 CCAGCTTGGAGTTGAGCTGTGGGCGGCAGAAGTTGCATATGATTTGCAGG 286
|||||||||.|..||..|.|||.|.||.|||||.|.||.|||..|.||.|
BPUM_1952___y 222 CCAGCTTGGGGCAGAAATATGGACAGCCGAAGTGGTATTTGAGCTTCAAG 271
BSNT_03303 287 AGGAATACCCTGACTTAAAGGTAGCTGTCATCACACCATTTTACGAGCAG 336
||||.||.||.|..|||||..|.||||||||.||.||||||||.||.|||
BPUM_1952___y 272 AGGAGTATCCAGCGTTAAAACTTGCTGTCATTACGCCATTTTATGACCAG 321
BSNT_03303 337 GAAAAGAACTGGAAAGAACCGAATAAGGAACAGTATGAAGCAGTTCTGGC 386
|||.||..||||||.||||..||.||.||...||||||||.|.||||.||
BPUM_1952___y 322 GAAGAGCGCTGGAATGAACAAAACAAAGAGTTGTATGAAGGAATTCTTGC 371
BSNT_03303 387 TCAGGCAGACTATGAAGCAAGCCTGACTCACCGTCCTTATGAAAGCCCGC 436
.|||||.||.|.||.||.|||..|.||.||..|.||.||||||||.|||.
BPUM_1952___y 372 ACAGGCCGATTTTGTAGAAAGTGTCACGCATAGACCGTATGAAAGTCCGG 421
BSNT_03303 437 TTCAATTCAAACAAAAAAATCAGTTCTTCATTGATAAGTCCGACGGGCTT 486
..|||||.||||||||.||.|..||.||.|||||.||..|.||.||.||.
BPUM_1952___y 422 CACAATTTAAACAAAAGAACCGTTTTTTTATTGAAAAAACAGATGGACTC 471
BSNT_03303 487 CT-GCTTTTATATGACCTGGAAAAGGAAGGCTCCCCTAAGTATATGCTTG 535
|| || |.|.|||||.|.|||..|.||.|||||.||.|||||.||
BPUM_1952___y 472 CTCGC-TCTGTATGATCCGGAGCATGATGGCTCGCCAAAGTACAT----- 515
BSNT_03303 536 GGTC-----AGCGGAAAAAAGGCGCGA-ACAGGATGGCTATCCC---ATC 576
|.|| ||||||||| |.| || .||| ||.||| ||.
BPUM_1952___y 516 GATCAAAGAAGCGGAAAA------CTATAC-CGAT---TACCCCATTATG 555
BSNT_03303 577 TACTTTATTACAATGGATGACTTGAGAGTGACAGTAGA---GGAAGACAG 623
||| ||.|||||||||||.|||||||.|..|||.|| ||||||
BPUM_1952___y 556 TAC---ATCACAATGGATGATTTGAGAGCGCAAGTTGAGGCGGAAGA--- 599
BSNT_03303 624 CTACTC-------------ATAG--------------- 633
|| |.||
BPUM_1952___y 600 ----TCCGTTTTTTGATGAAAAGCAAGAGAAAATTTGA 633
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