Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03309 and BPUM_1954
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_03309___yprA.1.24716.seq
# -bsequence dna-align/BPUM_1954___yprA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03309___yprA-BPUM_1954___yprA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03309___yprA-BPUM_1954___yprA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03309___yprA
# 2: BPUM_1954___yprA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2333
# Identity: 1669/2333 (71.5%)
# Similarity: 1669/2333 (71.5%)
# Gaps: 169/2333 ( 7.2%)
# Score: 5770.0
#
#
#=======================================
BSNT_03309___ 1 ATGAAAAAGAAATCACTGACTGAACTCATTTCTGATTTAAAAGGAAATGA 50
||||||||||||.||.|||..||||||||....||.||||||..|.|.||
BPUM_1954___y 1 ATGAAAAAGAAAACAATGAACGAACTCATAGAAGAATTAAAAAAAGACGA 50
BSNT_03309___ 51 AAACGTTGTGAATTGGCATGAAATTG------AGCCTCGGGAAGCAAAAA 94
|.|.||.|...||||||||||||||| ||||| |||.|.|
BPUM_1954___y 51 ACAGGTAGAACATTGGCATGAAATTGAAGCGAAGCCT------GCACAGA 94
BSNT_03309___ 95 CAAGGCCTATGCCCGAAAGTATAGACGAGAGAATCAAAGC-------GGC 137
|....||..||||..||||..|..|||| ||||| |||
BPUM_1954___y 95 CCTCTCCGTTGCCTAAAAGAGTGAACGA-------AAAGCTGAAAAAGGC 137
BSNT_03309___ 138 CCTTTCGAAAAGGGGCATTGA-TGAACTATATACTCACCAATATTCCGCT 186
.|||..||||.|.||| .||| ||||||.||.|.|||.|||.|....||.
BPUM_1954___y 138 GCTTGAGAAACGAGGC-GTGAGTGAACTCTACATTCATCAAAAGGAAGCC 186
BSNT_03309___ 187 TTTCAATATGTGCAAAAAGGA----GAAAGCA--TTGTTACCGTAACGCC 230
|||.||..|||| |.||| | |||| |.||.||.||.||.||
BPUM_1954___y 187 TTTGAACGTGTG----ATGGACGCGG--AGCATGTCGTAACTGTCACACC 230
BSNT_03309___ 231 AACAGCATCAGGAAAAACGTTATGCTACAACCTCCCAGTCCTGCAGTCCA 280
||||||.|||||.|||||..|.|||||||||||.||||||||.|||||.|
BPUM_1954___y 231 AACAGCTTCAGGTAAAACACTTTGCTACAACCTGCCAGTCCTTCAGTCGA 280
BSNT_03309___ 281 TCGCCCAAGATGAAACAAACCGGGCGTTATATTTATTTCCGACTAAAGCG 330
|||...|||||.|.||||..||..|..|.||||||||.||.||.||||||
BPUM_1954___y 281 TCGTTGAAGATCAGACAAGTCGCTCCCTTTATTTATTCCCAACAAAAGCG 330
BSNT_03309___ 331 CTGGCACAAGACCAAAAGAGCGAGCTAAATGAAATTATTGATGAAATGG- 379
||.|||||||||||||||||.||.||.||.||.||.||..|.||.||||
BPUM_1954___y 331 CTCGCACAAGACCAAAAGAGTGAACTTAACGAGATCATCCACGAGATGGA 380
BSNT_03309___ 380 ------GCATTGATATTAAAAGCTTTACATATGATGGGGATACGTCTCCG 423
| |||.|||.|.|| ||||||||.||||||||.|||||.
BPUM_1954___y 381 TGTTCCG-ATTCATAGTGAA------ACATATGACGGGGATACCTCTCCT 423
BSNT_03309___ 424 GCAAT----CAGACAAAAGGTGAGAAAAGCAGGTCATATTGTCATTACAA 469
||.|| |||..| ||.|||.|||||||.||.||||||||.||||
BPUM_1954___y 424 GCCATTCGGCAGCGA----GTCAGACAAGCAGGACACATTGTCATCACAA 469
BSNT_03309___ 470 ACCCCGATATGCTGCATTCTGCCATTCTACCGCATCATACGAAATGGGTC 519
|.||.||||||||.|||||.||||||.|.||.||||||||.|||||||||
BPUM_1954___y 470 ATCCAGATATGCTACATTCAGCCATTTTGCCTCATCATACAAAATGGGTC 519
BSNT_03309___ 520 AGTTTGTTTGAAAACCTTAAGTATATCGTCATCGATGAGCTTCATACGTA 569
||.||||||||.||..|.||||||||.|||||.||||||||.|||||.||
BPUM_1954___y 520 AGCTTGTTTGAGAATTTGAAGTATATTGTCATAGATGAGCTACATACATA 569
BSNT_03309___ 570 TCGAGGTGTGTTCGGCAGCCATGTGGCAAATGTGATCCGGCGGCTAAAGC 619
|.||||.||.||.||.||.||||||||.||||||||.||..||.||||.|
BPUM_1954___y 570 TAGAGGCGTATTTGGTAGTCATGTGGCGAATGTGATTCGCAGGTTAAAAC 619
BSNT_03309___ 620 GGATCTGCCGGTTTTATGGAAGTGATCCGGTTTTTATTTGTACTTCCGCA 669
|.||.||....|||||||||||||||||..||||.||||||||.||||||
BPUM_1954___y 620 GAATTTGTGCATTTTATGGAAGTGATCCAATTTTCATTTGTACGTCCGCA 669
BSNT_03309___ 670 ACAATTGCCAACCCAAAGGA-ATTGGGAGAGCAGCTGAC---AGGCAAAC 715
||||||||.||.|||||.|| .|||.| .|||||||.|| |.||||
BPUM_1954___y 670 ACAATTGCGAATCCAAAAGAGCTTGCG-CAGCAGCTAACGGGAAGCAA-- 716
BSNT_03309___ 716 CGATGCGGCTGGTCGATGACAACGGCGCACCGAGCGGACGCAAGCATTTT 765
|||||...||.|.||....|||||.|||||.|||||....|||.|||||
BPUM_1954___y 717 -GATGCATTTGATTGAGCGGAACGGGGCACCTAGCGGTAAAAAGAATTTT 765
BSNT_03309___ 766 GTGTTTTACAATCCGCCAATTGTGAACAAACCGCTCAATATTAGAAGGAG 815
||||||||||||||||||.|||||||.|||||.||.|||||||||...||
BPUM_1954___y 766 GTGTTTTACAATCCGCCAGTTGTGAATAAACCACTAAATATTAGACAAAG 815
BSNT_03309___ 816 CGCAACCGCAGAAGTGAATGAACTGGCGAAAGAGTTCCTTAAA--AACAA 863
.||..||.|.|..||.|||.||||.||.||| |.||..||||| || ||
BPUM_1954___y 816 TGCCGCCACTGTCGTTAATCAACTCGCTAAA-ACTTTTTTAAAGGAA-AA 863
BSNT_03309___ 864 AGTGCAGACCATTGTTTTTGCCAGAAGCAGAGTTCGGGTGGAAATTATTT 913
|.|.||.||.|||||||||||.|||||||||||..|.||.|||.|.||||
BPUM_1954___y 864 AATCCAAACGATTGTTTTTGCTAGAAGCAGAGTAAGAGTTGAAGTAATTT 913
BSNT_03309___ 914 TAAGCCATATTCAGGAGCTTGTGAAAAAAGAGATTGGAACAAAATCAATC 963
||||.||||||||.|||||.||||||||||||||.||..||||||||||.
BPUM_1954___y 914 TAAGTCATATTCAAGAGCTAGTGAAAAAAGAGATCGGTCCAAAATCAATT 963
BSNT_03309___ 964 AGAGGCTATCGGGGAGGCTATCTGCCGAAAGAGCGAAGAGAAATCGAAAG 1013
.|.||.|||||.|||||||||.|.||.||||||||..|.|..||.||||.
BPUM_1954___y 964 CGTGGATATCGCGGAGGCTATTTACCAAAAGAGCGGCGCGTGATTGAAAA 1013
BSNT_03309___ 1014 AGGCCTGAGAGAAGGCGACATTTTAGGAGTGGTCAGTACGAATGC-CTTA 1062
|||..||||||||||.||||||.||||.||.|||||||||||.|| |||
BPUM_1954___y 1014 AGGATTGAGAGAAGGAGACATTCTAGGTGTCGTCAGTACGAACGCACTT- 1062
BSNT_03309___ 1063 GAGCTTGGTGTTGATATCGGCCAGCTGCAAGTGTGTGTA--ATGACTGGG 1110
||..|.|||||||||||.||.||||| |||| ||.|||| |||||.|||
BPUM_1954___y 1063 GAATTAGGTGTTGATATAGGTCAGCT-CAAG-GTCTGTATCATGACCGGG 1110
BSNT_03309___ 1111 TATCCCGGAAGTGTTGCAAGTGCTTGGCAGCAGGCCGGACGAGCCGGCAG 1160
|||||.||.|||||.||.|||.|.|||||||||||.||.||.||.||.||
BPUM_1954___y 1111 TATCCTGGCAGTGTAGCGAGTACATGGCAGCAGGCAGGCCGTGCTGGAAG 1160
BSNT_03309___ 1161 AAGACACGGTGAATCTTTGATTATTTTGGTAGCCAATTCAACACCGATTG 1210
|.|.||.|..|||.|..|.||||||.||||.||.|.|||..||||..|||
BPUM_1954___y 1161 ACGTCATGAGGAAGCACTCATTATTATGGTGGCAAGTTCCTCACCCCTTG 1210
BSNT_03309___ 1211 ACCAATATATTGTGCGGCATCCTGAATATTTCTTTAATCGTTCGCCGGAA 1260
|||||||||||||..|.||.||||||||||||||||||.|..||||.|||
BPUM_1954___y 1211 ACCAATATATTGTCAGACACCCTGAATATTTCTTTAATAGACCGCCTGAA 1260
BSNT_03309___ 1261 TCTGCAAGAATCAATCCGGAGAATTTGATTATTTTAGTAGACCACTTAAA 1310
.||||.|||||.||.||.||.||..|.||.||||||||.||.||.|||||
BPUM_1954___y 1261 GCTGCCAGAATTAACCCAGAAAACCTCATCATTTTAGTGGATCATTTAAA 1310
BSNT_03309___ 1311 GTGTGCGGCTTATGAGCTTCCTTTTAGAGCTGATGAAGAATTTGGAGCCA 1360
.|||||..|.||.||||||||.|||.|.|..||||||.|.|||||.|.||
BPUM_1954___y 1311 ATGTGCTTCCTACGAGCTTCCGTTTCGGGAGGATGAACAGTTTGGCGACA 1360
BSNT_03309___ 1361 TGGAAGTCAG-TGATATTCTTG-AGTATCTT-CAGGAAG-AGGCTGTTCT 1406
||||.|| || .||.||| ||| |.|| ||| ||.||.| |||| |||||
BPUM_1954___y 1361 TGGACGT-AGAAGAGATT-TTGCAATA-CTTACATGAGGAAGGC-GTTCT 1406
BSNT_03309___ 1407 TCACCGCAACGGCGAA-CGGTACCATTGGGCAAGTGAGTCGTTTCCTGCT 1455
.||....|.||| ||| |||||..|||||.||..|.||||.||.||.|
BPUM_1954___y 1407 CCATTTTAGCGG-GAATCGGTATTATTGGTCAGATCAGTCATTCCCGG-- 1453
BSNT_03309___ 1456 TCAAA---CATCAGTTTGCGTTCCGCCTCCCAGGAAAATGTCGTTATAGT 1502
||.| ||||||..|.||.||.||...|||||||||||||||.||.||
BPUM_1954___y 1454 -CACATGGCATCAGCCTCCGGTCTGCAAGCCAGGAAAATGTCGTGATTGT 1502
BSNT_03309___ 1503 TGATCAGTCGGATATTGCAAATGTAAGGATTATCGGTGAAATGGACCGTT 1552
.|||||.||.|||.|.||.|||||..|||||||.||.||.||||||||||
BPUM_1954___y 1503 GGATCAATCAGATGTGGCGAATGTTCGGATTATTGGCGAGATGGACCGTT 1552
BSNT_03309___ 1553 TTAGTGCGATGACGCTTTTACATGATGAAGCAATTTATTTGCATGAAGGC 1602
|.||||||||||||||..|.||||||||.||.||||||||.||.|||||.
BPUM_1954___y 1553 TCAGTGCGATGACGCTGCTCCATGATGAGGCCATTTATTTACACGAAGGG 1602
BSNT_03309___ 1603 GTTCAGTATCAAGTTGAGAAGCTCGATTGGGACCATAAAAAGGCGTATGT 1652
||||||||||||||.||.|||||.||||..||.|||...|||||.|||||
BPUM_1954___y 1603 GTTCAGTATCAAGTGGAAAAGCTAGATTACGAGCATCTGAAGGCTTATGT 1652
BSNT_03309___ 1653 CAGAAAAGTCGATGTCGAATATTATACGGATGCAAACCTGGCAGTTCAGC 1702
.|.|.||||.|||||.|||||.|||||.|||||.||..|.||.|||||.|
BPUM_1954___y 1653 GAAACAAGTAGATGTAGAATACTATACAGATGCGAATTTAGCTGTTCAAC 1702
BSNT_03309___ 1703 TGAAGGTATTAGAAATCGATAAAACG--AAAGAAAAAAGCCGTACGTCAT 1750
|.||||||.|.|||||||||.|.||| |.|||||.||||.||| ||..
BPUM_1954___y 1703 TTAAGGTACTTGAAATCGATCAGACGACAGAGAAAGAAGCTGTA--TCTG 1750
BSNT_03309___ 1751 TGCACTACGGAGACGTCACTGTCAATGCCCTGCCGACCATTTTTAAAAAA 1800
|.||||.|||.||.||.||.|||||.||..||||.||.||.|||||||||
BPUM_1954___y 1751 TTCACTTCGGTGATGTGACCGTCAACGCAATGCCTACAATATTTAAAAAA 1800
BSNT_03309___ 1801 ATAAAAATGACCACTTTTGAAAATATTGGGTCTGGACCTATTCATTTGCC 1850
||.....|||..|||..|||||||||.|||||||||||.|||||.||.||
BPUM_1954___y 1801 ATCCGTCTGAGTACTGGTGAAAATATCGGGTCTGGACCGATTCACTTACC 1850
BSNT_03309___ 1851 GGAAGAAGAACTGCATACAAGTGCAGCTTGGCTCGAAATCAAAAC----- 1895
.|||||||||.|.|||||.|||||.||||||.|.|||.| |.||
BPUM_1954___y 1851 AGAAGAAGAAATTCATACGAGTGCGGCTTGGTTTGAATT--ACACGAGGC 1898
BSNT_03309___ 1896 --AGCGGA----TGAAGACATCGGGGAAAAGACACTGGAACAGCTGCTTC 1939
|||||| |||| ||.||||||||.||||||||.||.|
BPUM_1954___y 1899 AGAGCGGAGATTTGAA---------GAGAAGACACTTGAACAGCTCCTGC 1939
BSNT_03309___ 1940 TTGGCATCTCGAATGTGCTGCAGCATATTGTCCCTGTGTATATCATGTGT 1989
|.||||||.|.|||||.||.|||||.|||||.||||..|.|.||||||||
BPUM_1954___y 1940 TAGGCATCGCAAATGTTCTTCAGCACATTGTACCTGCTTTTGTCATGTGT 1989
BSNT_03309___ 1990 GATCGAAATGATGTTCATGTTGTTTCTCAAATTAAAGCAGCCCATACCGG 2039
||.||...||||.|||||||.|||||.|||||||||||.||.||||||||
BPUM_1954___y 1990 GACCGTTCTGATATTCATGTGGTTTCACAAATTAAAGCGGCACATACCGG 2039
BSNT_03309___ 2040 ATTGCCAACCATATTTTTATATGATCATTATCCGGGCGGTATCGGTTTGG 2089
|...||.||..|.|||||||||||.|||||.||.|||||.||||||||..
BPUM_1954___y 2040 AAAACCGACGGTCTTTTTATATGACCATTACCCTGGCGGAATCGGTTTAA 2089
BSNT_03309___ 2090 CGGAGGAAGT-----CTTTAAACGTTTTTCAGACATTAATGAA------- 2127
...||||||| || |||| |..|||||
BPUM_1954___y 2090 GTAAGGAAGTACAAGCT-----CGTT---------TCGATGAAATAGCAG 2125
BSNT_03309___ 2128 --GCGGCGAAACAACTGATTACACATTGTCCTTGTCATGACGGCTGTCCG 2175
||.||.|..||.||.|||...|..||.|..|||.|..|.||||||||.
BPUM_1954___y 2126 GCGCAGCCATTCAGCTCATTGAGCGGTGCCGCTGTGAAAATGGCTGTCCA 2175
BSNT_03309___ 2176 TCTTGTATAGGTACAGAAATAGAAGGGATAAAAGCAAAGGAAAGAATTTT 2225
||.||.||.||.|..|||||..|||.|.| |||.|||||.|
BPUM_1954___y 2176 TCCTGCATTGGCATGGAAATGAAAGAGGT-----CAACGGAAAAA----- 2215
BSNT_03309___ 2226 GCAGC--TGTTGGATCAAATGT-CGTAA----- 2250
||||| |||||.|| ..|||| ||||.
BPUM_1954___y 2216 GCAGCATTGTTGAAT-TGATGTCCGTATTTTAA 2247
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