Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03322 and BPUM_1962

See Amino acid alignment / Visit BSNT_03322 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:49
# Commandline: needle
#    -asequence dna-align/BSNT_03322___yppC.1.24716.seq
#    -bsequence dna-align/BPUM_1962___yppC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03322___yppC-BPUM_1962___yppC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03322___yppC-BPUM_1962___yppC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03322___yppC
# 2: BPUM_1962___yppC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1051
# Identity:     662/1051 (63.0%)
# Similarity:   662/1051 (63.0%)
# Gaps:         188/1051 (17.9%)
# Score: 1939.5
# 
#
#=======================================

BSNT_03322___      1 -----GT-GCAAGAACAACAGACCATTAGAAAGCTTCTGAGCCGGATTG-     43
                          || .||||||.|.||.|.|||.|...|||.|.|       |||| 
BPUM_1962___y      1 ATGTTGTCACAAGAAGAGCACATCATCACTCAGCATAT-------ATTGC     43

BSNT_03322___     44 ----AGCGGCAGACAAAAATAAAAAACGCGGATAACATTTCAAGAACAAA     89
                         |.||..||..|||||||||       ||.|||.|..|.||.|||||
BPUM_1962___y     44 GTGAAACGAAAGTGAAAAATAAA-------GACAACCTGACGAGGACAAA     86

BSNT_03322___     90 TGCTTATAAAGC-ATTTTACGACCGTCACCCGGAAATCAAATGGTCGCTT    138
                     |||||| .|||| .|||||.||.|||||.||.||.||.|||||||||||.
BPUM_1962___y     87 TGCTTA-CAAGCGCTTTTATGATCGTCATCCAGAGATGAAATGGTCGCTG    135

BSNT_03322___    139 TTGGCTTCTTTCGTTTCTCGTAATGCCGGCTGGTCAATGACTGACTTAAA    188
                     .|.|||||.||.||.||..|.|||||.||.|||||.|||||.||..||||
BPUM_1962___y    136 CTTGCTTCCTTTGTCTCGAGAAATGCTGGATGGTCTATGACGGATCTAAA    185

BSNT_03322___    189 AGGC-AGTCTGTTTCAGCTTGGACTCCGTGAGAG-----ACAG--CAAGA    230
                     .||| || ||.||.||        |||     ||     ||||  |||||
BPUM_1962___y    186 GGGCGAG-CTCTTCCA--------TCC-----AGGTTTAACAGATCAAGA    221

BSNT_03322___    231 ATGG----TTCTTTTT---AGCCTATGAAAGAGCGAACTGGCTTATTTTT    273
                     ..||    || |||||   |||.||||||||||||||.|||||.||.|||
BPUM_1962___y    222 GGGGCACCTT-TTTTTCACAGCATATGAAAGAGCGAATTGGCTGATCTTT    270

BSNT_03322___    274 TCGGATGCCTATCCGCAGCTTCTACTATACCACTGGTCAAAAAGAGTT--    321
                     ||.|||||.||.||.||||||||..|.||..|.|||||  .|||.|.|  
BPUM_1962___y    271 TCAGATGCTTACCCCCAGCTTCTTTTGTATGAATGGTC--TAAGCGGTGC    318

BSNT_03322___    322 GGGAAACCGCTGTTTCATCTGCTGCATGTGTTTGGC-GTCTCACAATTTA    370
                     ||.|||||..||||.||||||||.| .||.|||..| |||||.|..||||
BPUM_1962___y    319 GGCAAACCTTTGTTCCATCTGCTTC-CGTATTTTTCTGTCTCTCGTTTTA    367

BSNT_03322___    371 T---------GTCGGAAGAATGGACCCGTTTTTGGCATGAGCGAAATACG    411
                     |         ||.||||         ||||||||||...||||..|.||.
BPUM_1962___y    368 TGAGCACTGAGTGGGAA---------CGTTTTTGGCTAAAGCGTGACACA    408

BSNT_03322___    412 GAGCGGCTAATGTATGCCCTCATTATAAATGAACAAAACACTATCCAAAC    461
                     |||||.|||.|.|||||.|||||.||||||||||||.|.|||||.|||.|
BPUM_1962___y    409 GAGCGTCTACTTTATGCACTCATCATAAATGAACAATATACTATACAATC    458

BSNT_03322___    462 ACCTATTATACAAAATC--CTTCGTTTAAAAAGAATGTTTTTGACACGAT    509
                     .||||||||||||||||  ||||  |.|||||||||||||||.||.||||
BPUM_1962___y    459 TCCTATTATACAAAATCCTCTTC--TGAAAAAGAATGTTTTTCACTCGAT    506

BSNT_03322___    510 TC-----CTTTTTATTTAAGTGATTGGTTACATTTTAACACCGTTATTTT    554
                     ||     ||.|||     ||.||.|||..|||||||.|.||||||.||||
BPUM_1962___y    507 TCAATATCTGTTT-----AGCGAGTGGGGACATTTTCAAACCGTTGTTTT    551

BSNT_03322___    555 TCCTTCCTCAAATGGGTTTCTTTAC-GGCATTT----CAGTGAA----AC    595
                     .||       ||.||     ||.|| |||||||    ..||.||    ||
BPUM_1962___y    552 CCC-------AACGG-----TTGACGGGCATTTGTACGGGTTAACCATAC    589

BSNT_03322___    596 G---CTTTTC-------AAAG-GCGGAGGA----AAGGATAAGGCT-GGG    629
                     |   .|||||       |||| |||.|..|    |.|||.||..|| |.|
BPUM_1962___y    590 GGAAGTTTTCCAACGTAAAAGAGCGTATTACATTAGGGAAAAAACTAGCG    639

BSNT_03322___    630 AAAGCAGCTGTCTCAATTGCTGTTCAAGCCAGAATTGTTCTCCTCTTTTT    679
                     |||          |.|||  ..|||..||| ||.||.||.||...|||||
BPUM_1962___y    640 AAA----------CTATT--ATTTCGGGCC-GATTTATTTTCGGATTTTT    676

BSNT_03322___    680 ATCACTTTTTGCACACAGTGCCGCACACAGGTTCCCGTTTTGATATGGAA    729
                     ||||.||||||||.||.||.|||||.||.||.||.||.||||||.|.||.
BPUM_1962___y    677 ATCATTTTTTGCATACTGTTCCGCATACCGGATCACGGTTTGATTTTGAG    726

BSNT_03322___    730 AAGATGATCGGGATTACAAAAAGAACATCTCCTATGCTAAGGACATG-CT    778
                     ..|.|..|.|||||..|.|.|||..||.|.|||.|.||..|.|| || .|
BPUM_1962___y    727 CCGTTTTTAGGGATCGCTAGAAGGTCAACACCTTTTCTTCGAAC-TGTTT    775

BSNT_03322___    779 ACCCTGAGTTAATCCACTCATTAGACG--GAACGAAAACAGATTGGTTTC    826
                     |.||.|.|.|.|..||.||||||||||  .||.||.|  |||||||||||
BPUM_1962___y    776 ATCCAGTGATGACACATTCATTAGACGATCAAAGAGA--AGATTGGTTTC    823

BSNT_03322___    827 ATGGAAAGATAAAGA---AAACGTTCTTTAGGCGCGAGGAA------TTG    867
                     |   |||||.|..||   .|||.||.|||      ||.|||      ||.
BPUM_1962___y    824 A---AAAGAAATTGAGCCCAACTTTGTTT------GATGAAGAGACGTTA    864

BSNT_03322___    868 CCGAAGCAGATTGAATTGACAGACTGGTATTTACATAAAAAGCGCCAGCT    917
                     ||.||.||.||||||.||||.|||||||||||.||||||||..|.|||| 
BPUM_1962___y    865 CCAAAACAAATTGAACTGACCGACTGGTATTTTCATAAAAAAAGACAGC-    913

BSNT_03322___    918 TCATGCG----CTTTTTGCGGTGGAGCAGTGGC-------TGAAAAAATA    956
                        ||||    |||||..|..|.|||||    |       ||.|.|||||
BPUM_1962___y    914 ---TGCGTTTTCTTTTCTCATTAGAGCA----CTATTTTTTGCATAAATA    956

BSNT_03322___    957 A    957
                     |
BPUM_1962___y    957 A    957


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