Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03325 and BPUM_1964
See
Amino acid alignment /
Visit
BSNT_03325 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:49
# Commandline: needle
# -asequence dna-align/BSNT_03325___ponA.1.24716.seq
# -bsequence dna-align/BPUM_1964___ponA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03325___ponA-BPUM_1964___ponA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03325___ponA-BPUM_1964___ponA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03325___ponA
# 2: BPUM_1964___ponA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2922
# Identity: 1938/2922 (66.3%)
# Similarity: 1938/2922 (66.3%)
# Gaps: 387/2922 (13.2%)
# Score: 6226.5
#
#
#=======================================
BSNT_03325___ 1 ATGTCAGATCAATTTAACAGCCGTGAAGCTCGACGAAAAGCGAACAGCAA 50
|||||.||||||||||..||.||||||...|||||.|| |||||
BPUM_1964___p 1 ATGTCTGATCAATTTACAAGTCGTGAACAGCGACGTAA-------AGCAA 43
BSNT_03325___ 51 GTCGAGCCCTTCACCGAAAA----AAG--GCAAGA-AACGAAAAAAGG-- 91
|||.| ||||| ||| ||||.| ||| ||||||||
BPUM_1964___p 44 GTCAA----------GAAAACAATAAGAAGCAAAAGAAC-AAAAAAGGCA 82
BSNT_03325___ 92 --------GC-GGATTGTTTAAAAAGACCCTTTTCACTTTACTCAT--TC 130
|| ||..|.||||||||.|...||||..||||||||.| ||
BPUM_1964___p 83 AAAAGAAAGCAGGTCTATTTAAAAAAATATTTTTATCTTTACTCGTGATC 132
BSNT_03325___ 131 TGTTTGTTTTAGGCGTAGTCGGCGG---CGCTGTTACATTTGCCGTTATG 177
.| |.||.||.|..||||.|.||| |.| .||.|||||||||.|.
BPUM_1964___p 133 GG--TCTTCTATGTCTAGTGGCCGGAATCAC---AACTTTTGCCGTTTTT 177
BSNT_03325___ 178 GTTTCAGATGCGCCGTCCCTTGATGAAAGCAAATTGAAGACGCCTTATTC 227
|..|||...||.||.||..|||||||.||.||..|.||.||.||||||||
BPUM_1964___p 178 GCATCAAGCGCTCCTTCAATTGATGATAGTAAGCTCAAAACACCTTATTC 227
BSNT_03325___ 228 ATCAACGATTTATGATAAAAATGGAAAAGAGATCGCCGAAGTCGGCGCCG 277
.||||.|.|||||||.|.|.|...|||||...|.||.||||||||.||.|
BPUM_1964___p 228 TTCAAAGCTTTATGACATAGACAAAAAAGTATTTGCAGAAGTCGGTGCGG 277
BSNT_03325___ 278 AAAAACGGACCTACGTCTCGATAGATGAAATTCCCGATGTTGTAAAAGAA 327
|||||.|.||.||.||||||||..|.||.||.||||||||.|||||||||
BPUM_1964___p 278 AAAAAAGAACGTATGTCTCGATTAAAGATATACCCGATGTGGTAAAAGAA 327
BSNT_03325___ 328 GCCTTTATCGCGACAGAAGACGCCCGTTTTTATGAGCACCACGGGATTGA 377
||.|||||.||.||.|||||.||.|||||||||.|.||||||||||||||
BPUM_1964___p 328 GCATTTATTGCAACGGAAGATGCACGTTTTTATAAACACCACGGGATTGA 377
BSNT_03325___ 378 CCCTGTCCGTATCGGCGGTGCTTTAGTTGCCAACTTTAAAGACGGCTTCG 427
.||..|||||||.||||||||..|.||.||.|||.||.|.||||||||.|
BPUM_1964___p 378 TCCAATCCGTATTGGCGGTGCCCTTGTCGCAAACGTTGAGGACGGCTTTG 427
BSNT_03325___ 428 GGGCTGAAGGCGGAAGTACGATCACCCAGCAGGTCGTCAAAAACTCCCTT 477
|.||||||||.||||||||.||.||.|||||.||.||.|||||..|.||.
BPUM_1964___p 428 GAGCTGAAGGTGGAAGTACAATTACACAGCAAGTTGTGAAAAATACTCTA 477
BSNT_03325___ 478 CTTTCACATCAGAAGACGTTGAAACGGAAGGTCCAGGAAGTATGGCTTTC 527
|||.|..||||.||.|||||.|||||.||.||.||||||||||||||.||
BPUM_1964___p 478 CTTACCAATCAAAAAACGTTAAAACGTAAAGTACAGGAAGTATGGCTCTC 527
BSNT_03325___ 528 AATTCAGCTGGAGCGCAATTACTCTAAAGATGAAATTTTAGAAATGTATT 577
.||||||||.||||..||.|||||||||||||||||||||||||||||||
BPUM_1964___p 528 GATTCAGCTTGAGCAAAAGTACTCTAAAGATGAAATTTTAGAAATGTATT 577
BSNT_03325___ 578 TAAACCGGATTTATTTTTCTCCTAGAGCATACGGAATCGGAAAAGCGGCG 627
|||||||.||||..||.||.|||...||.|||||..|.||.||||||||.
BPUM_1964___p 578 TAAACCGCATTTTCTTCTCGCCTTATGCTTACGGTGTTGGGAAAGCGGCT 627
BSNT_03325___ 628 GAAGAATTTTTCGGCGTTACAGATTTAAGCAAATTGACTGTCGAACAGGC 677
|||.|||||||||||||.||||||||||..||..|.|||||.|.||||||
BPUM_1964___p 628 GAACAATTTTTCGGCGTGACAGATTTAAATAAGCTAACTGTTGCACAGGC 677
BSNT_03325___ 678 TGCCACACTGGCAGGAATGCCGCAGAGCCCGACAGCGTACAATCCCGTTA 727
|||||||||.|||||.||||||||||||||..|.||.||.||.||.||.|
BPUM_1964___p 678 TGCCACACTTGCAGGTATGCCGCAGAGCCCTTCTGCTTATAACCCAGTGA 727
BSNT_03325___ 728 AAAACCCGGATAAAGCGGAAAAACGACGGAACATCGTACTCAGTCTGATG 777
||||.||.||...|||.||||||||.||.||.|||||..|..|.||.|||
BPUM_1964___p 728 AAAATCCTGAGGCAGCAGAAAAACGTCGTAATATCGTGTTAGGCCTCATG 777
BSNT_03325___ 778 AAAAAGCAAGGATTTATTTCTGATTCTCAATATAACAAAGCGAAAAAAGT 827
|||||.|||||.|.|||||||| |.||||...|..||||
BPUM_1964___p 778 AAAAAACAAGGCTATATTTCTG------------AGAAAGACTATGAAGT 815
BSNT_03325___ 828 GGCA------------GT--GAAAGACGAAGGCGTCGTG-----TCACAG 858
|||| || .|||||| |||.||| |.|.|
BPUM_1964___p 816 GGCAAAAGCAACCCCTGTCAAAAAGAC-----CGTAGTGCCTGCTGATA- 859
BSNT_03325___ 859 AAGGAATATGAAAAAGCAAGTA--CAAACAAATACAGCGCATTTGTTGAA 906
||||| ||.|||.||.| |||..||.|||...||.|.|.|||||
BPUM_1964___p 860 ----AATAT--AAGAGCCAGAACTCAAGTAAGTACTCTGCTTATATTGAA 903
BSNT_03325___ 907 GAGGTTATGAAGGAAATTGATGAAAAATCTGATGTCGATCCATCTGCTGA 956
||.||.|||.|.|||.|..|..|||||.|..|.||.|||..|||..|.||
BPUM_1964___p 904 GAAGTCATGGAAGAAGTACAGAAAAAAGCCAAAGTAGATGTATCAACAGA 953
BSNT_03325___ 957 CGGATTAAAGATCTATACGACATTAGATACAAAAGCACAAGATAAACTAG 1006
.||||||||.||||||||..||.|.|||...|||||.||.|||.|.||||
BPUM_1964___p 954 TGGATTAAAAATCTATACTTCACTCGATCGTAAAGCTCAGGATCACCTAG 1003
BSNT_03325___ 1007 ATGA-ATTAATGGACGGAGACACCGTCGGATTTACTGAAGGCATGCAGGG 1055
|||| ||| ||..|.||.||..|.||.||||||||..||||.|||||||.
BPUM_1964___p 1004 ATGATATT-ATCAATGGGGATTCTGTTGGATTTACGAAAGGTATGCAGGC 1052
BSNT_03325___ 1056 CGGTGTGACGCTT-CTCGATACCAAAAACGGAGAAGTCCGAGCGATTGGT 1104
.|||||.|| ||| ||.|||||.|||||.||.|||.|||||||.|||||.
BPUM_1964___p 1053 GGGTGTCAC-CTTGCTTGATACAAAAAATGGTGAAATCCGAGCTATTGGC 1101
BSNT_03325___ 1105 GCGGGACGCAAT----CAGCCTGTCGGAGGCTTTAACTATGCTACTCAAA 1150
|..|||||..|| |||| |||.|||||||||||||| ||
BPUM_1964___p 1102 GGTGGACGTGATGTACCAGC----CGGCGGCTTTAACTATGC------AA 1141
BSNT_03325___ 1151 CTAAGGCA------CAGCCTGGTTCGACCATAAAACCGATTTTGGACTAC 1194
||.|.||| |||||.|||||.||.||.|||||.|||||.||.|||
BPUM_1964___p 1142 CTGATGCAAAACGTCAGCCAGGTTCAACAATTAAACCCATTTTAGATTAC 1191
BSNT_03325___ 1195 GGACCAGTTATTGAAAATAAGAAATGGTCCACATACGAACAAATTGATGA 1244
||.||.||.||||||||.||.||||||||.||.|||.|.|||||||||||
BPUM_1964___p 1192 GGTCCTGTCATTGAAAACAAAAAATGGTCAACGTACCAGCAAATTGATGA 1241
BSNT_03325___ 1245 CTCAGCTTATACGTATTCTAACGGAAAACCGATTCGTGATTGGGACCGCA 1294
..|..|.||||||||.||.|||||.|.|||||||..|.|.|..|||.|.|
BPUM_1964___p 1242 TGCGCCGTATACGTACTCAAACGGTACACCGATTAATAACTTTGACAGAA 1291
BSNT_03325___ 1295 AATATCTAGGGCCTATCTCAATGCGTTACGCTCTGGCCCAATCAAGAAAT 1344
.|.||.|||||...||.||.|||.|....|||.||||.||||||.||||.
BPUM_1964___p 1292 GACATTTAGGGAAAATGTCGATGAGAAGTGCTTTGGCACAATCACGAAAC 1341
BSNT_03325___ 1345 ATACCTGCTTTAAAAGCATTCCAGGCAGTCGGTAAAGATACTGCTGTAGA 1394
||.|||||..||||.||.|||||.|.||..||.|.|||.|.|||.||..|
BPUM_1964___p 1342 ATCCCTGCCCTAAAGGCTTTCCAAGAAGCTGGCACAGACAATGCCGTTCA 1391
BSNT_03325___ 1395 CTTTGCAA-----------ATGGACTCGGGCTTGGTTTAACAAAAGATAA 1433
.|||||.| |||||| |||.|...|||.|
BPUM_1964___p 1392 ATTTGCTAACAACTTAGGTATGGAC-----------TTACCGTCAGACA- 1429
BSNT_03325___ 1434 TGTAACAGAGGCCTATTCTATTGGCGGTTTCGGTGGGAACGATGGTGTTT 1483
|..|||||.|.|||||.||.||.||.||.| |||||||.||.|
BPUM_1964___p 1430 --TTCCAGAGTCTTATTCAATCGGTGGATTTG------ACGATGGCGTGT 1471
BSNT_03325___ 1484 CTCCTCTGACAATGGCAGGTGCATACAGCGCGTTTGGAAATAACGGAACG 1533
|..||||.|.||||||.||.||.|..||.||.||.||.|||||.|||...
BPUM_1964___p 1472 CCTCTCTAAAAATGGCTGGGGCCTTTAGTGCATTCGGTAATAATGGATAT 1521
BSNT_03325___ 1534 TATAATGAACCGCATTTTGTAAAATCTATCGAATTTAACGATGGCACGAA 1583
|||||.|||||||||..|||.|..|||.|.||||||||.||.||.||.||
BPUM_1964___p 1522 TATAACGAACCGCATGCTGTCACGTCTGTTGAATTTAATGACGGTACAAA 1571
BSNT_03325___ 1584 GCTTGACTTAACACCAAAATCAAAATCAGCCATGAGTGATTATACTGCGT 1633
|||||||.|.||||||.|.||.|||.|.||.||||||||.||.||.||.|
BPUM_1964___p 1572 GCTTGACCTTACACCAGATTCTAAAGCGGCTATGAGTGACTACACAGCCT 1621
BSNT_03325___ 1634 TTATGATTACAGATATGCTGAAAACAGCTGTGAAGACAGGTACTGG-ACA 1682
|||||.|.|||||||||||.|||||.|||||..|..|.||.||||| |||
BPUM_1964___p 1622 TTATGGTCACAGATATGCTAAAAACTGCTGTCCAATCTGGAACTGGTACA 1671
BSNT_03325___ 1683 GCTTGCACAAGTACCTGGTGTAGAAGTTGCAGGAAAAACAGGAACGACTA 1732
||||||||||||||....||..|||||||.||.||||||||.||.||.|
BPUM_1964___p 1672 -CTTGCACAAGTACCGAACGTTCAAGTTGCTGGTAAAACAGGTACAACGA 1720
BSNT_03325___ 1733 ACTTT------GATGATAATGAAGTCAAAAGGTACAATAT---CGCTAGC 1773
||||| ||||||| |.||.|..|||||||| ..||.||
BPUM_1964___p 1721 ACTTTACACAAGATGATA------TTAATAAATACAATATTCCTTCTGGC 1764
BSNT_03325___ 1774 GGTGGCGCCCG--AGATTCTTGGTTCGTTGGCTACACACCGCAATATACA 1821
|||| || ||||||.|||||.|||||.||.||.||||||||||||
BPUM_1964___p 1765 GGTG-----CGAAAGATTCGTGGTTTGTTGGTTATACGCCGCAATATACA 1809
BSNT_03325___ 1822 GCTGCCGTCTGGACGGGAATGGGAGA---AAACGAGGCTGGAAAGAAA-- 1866
||.|||||.|||||.|||||.||..| |||.||.|| |||..|.||
BPUM_1964___p 1810 GCAGCCGTTTGGACTGGAATCGGTAATTCAAAAGATGC-GGACGGCAAAA 1858
BSNT_03325___ 1867 ------TCACTTTCAGCTGAAGAGCAAAAAGTTGC--AAAGCGCATCTTC 1908
||| |||.|.|.|||||....||||| |||.|| ||||
BPUM_1964___p 1859 TGTGGCTCA----CAGATTATGAGCAGCGTGTTGCCAAAATCG--TCTT- 1901
BSNT_03325___ 1909 GCCCAGC---TCATCGCCGATGTCGATGACGGAAGCGGATCATTTGAGAA 1955
||||| |.||..|..|..|.|||||.||||||||.||||||||.||
BPUM_1964___p 1902 --CCAGCGATTAATTTCTCAAATTGATGATGGAAGCGGCTCATTTGAAAA 1949
BSNT_03325___ 1956 GCCTGACAGCGTAGTGGAAGCCACCGTAGAAAAAGGTTCTAATCCGGCAA 2005
.||.|||||.||.||.|||||.||.||.||||||||.||..||||.||.|
BPUM_1964___p 1950 ACCAGACAGTGTCGTTGAAGCGACGGTTGAAAAAGGATCGGATCCAGCGA 1999
BSNT_03325___ 2006 AACTGGCAGGGCCAAATACGCCAAGCGATAAGAAGCTCACAGAGTACTTT 2055
||.|.||.||.||||||||.|||||.|||||||||...|||||.||||||
BPUM_1964___p 2000 AATTAGCCGGACCAAATACACCAAGTGATAAGAAGACAACAGAATACTTT 2049
BSNT_03325___ 2056 GTTAAAGGCACAGCTCCTTCTACTGTTTCTAAAACATATGAGAAAGAAGA 2105
||.|||||.||.|.|||..|.|..||.|||.|.||||||||||||.||
BPUM_1964___p 2050 GTAAAAGGAACGGTTCCGACAAAAGTATCTGACACATATGAGAAAAAA-- 2097
BSNT_03325___ 2106 AAAAGAGGAAACAGCTAAACTGTCTGGTTTAAA---CGTGAAATACGATA 2152
|||.|.|.|||.|..||||..||||| .||| ||||||.
BPUM_1964___p 2098 -------GAAGCCGATAAGCCATCTGACTTAAAAGCAGTG---TACGATG 2137
BSNT_03325___ 2153 AAGACAATCAATCTTTAACGTTAA------GCTGGAATTACGACGGAGAT 2196
|.||.||..||||..|.||..|.| |||...||.||||||.||||
BPUM_1964___p 2138 AGGAGAAAAAATCCATCACACTGACTTGGGGCTATGATGACGACGCAGAT 2187
BSNT_03325___ 2197 GCGACCTTTGCTGTTAAGCAATCTGTTGACGGCGGCAGCTACTCGGAAAT 2246
||.||.|||..|||.||.|||.|.|||||...||||.||||....||.||
BPUM_1964___p 2188 GCTACATTTAATGTAAAACAAGCGGTTGATAACGGCGGCTATAAAGACAT 2237
BSNT_03325___ 2247 TCAAAACAGCTCTGCAAAAGAGGCAGTTATTTCGGGTGTGCAGCCAGGAT 2296
|||||||||.|||||.|||||.||.||.||.||.|.||||.||||.||.|
BPUM_1964___p 2238 TCAAAACAGTTCTGCTAAAGAAGCGGTCATCTCTGATGTGAAGCCTGGCT 2287
BSNT_03325___ 2297 CTGTATACAAATTCGAAGTAACAGCCGTCAGT-GATGATGGCAAAAGTA- 2344
||...||.||||||.||||||||||| .|.|| ||.||||..|.|||||
BPUM_1964___p 2288 CTACTTATAAATTCCAAGTAACAGCC-ACTGTAGAGGATGTTACAAGTAA 2336
BSNT_03325___ 2345 --CAGCTTCCACAT--CTTATGAGGTGCCA--AAAGCTGAAGACGATGAA 2388
|||||||.||.| ||.| ||| ||.|.|||.||.||||||
BPUM_1964___p 2337 AGCAGCTTCTACCTTCCTCA-------CCATCAAGGATGATGAAGATGAA 2379
BSNT_03325___ 2389 GATAAAAAAGACCAGCAACAAACGGATGATGAAAAACAAGATGATGAGAA 2438
||..|||||| |.||||||||.||..|||| ||||
BPUM_1964___p 2380 GAAGAAAAAG------------CAGATGATGAGAACAAAGA-----AGAA 2412
BSNT_03325___ 2439 GA--CTCAG------GAT--------GATACACAA-ACTGATGATTCTCA 2471
|| |.||| ||| ||.|.|||| |||||.||| |
BPUM_1964___p 2413 GAACCGCAGCAGCCTGATGACGAGCAGACAGACAAGACTGACGAT----A 2458
BSNT_03325___ 2472 A-AAAGAT-GACGGTCAG--ACGGATCAAGATCAGACAGATGATTCAACA 2517
| |||.|| .||...||| ||.|||.|..|..||.|||||||| |.|
BPUM_1964___p 2459 ACAAAAATCAACCCCCAGGCACTGATGAGCAAAAGCCAGATGAT---AAA 2505
BSNT_03325___ 2518 AACGATCAAGACAAAAAACAAGA-------CAATACGAACACCAATCCGT 2560
||.||||||||||||.|..|||| |||..||.| |||.||
BPUM_1964___p 2506 AAAGATCAAGACAAAGATAAAGATCAGGATCAAGGCGGA----AATACG- 2550
BSNT_03325___ 2561 CCGACAAC---AATAA--------CCAAGACCAATCAAACGATAATGATA 2599
||.||| ||||| | ||||||||
BPUM_1964___p 2551 --GAAAACGGAAATAATGGTTCTTC--------------CGATAATG--- 2581
BSNT_03325___ 2600 ACG-ACA-ACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTG 2647
| .|| ||||| |||| |||| ||||
BPUM_1964___p 2582 --GCTCAGACAGT-ACAA--------------ATGG------GAAC---- 2604
BSNT_03325___ 2648 GTAAGAATGATTCA-ACAGGTTCTGACACGAATAAAAATAAAACAGACAC 2696
||.| |.||| |.| ||||| ||||||.|||||| |||.|.
BPUM_1964___p 2605 ---AGCA--ACTCACAAA----CTGAC---AATAAAGATAAAA-AGAAAG 2641
BSNT_03325___ 2697 AT-CTAATAAAAC--ACAAACAAA-CTC---------ATCA-----TCC- 2727
|| .||..||||| |||.||||| ||| |||| |||
BPUM_1964___p 2642 ATGATACGAAAACGAACACACAAAGCTCAAGTTCGCAATCAACTTCTCCT 2691
BSNT_03325___ 2728 -ATTGAAAAAACAAATTAA--- 2745
||.|||||.| ||||.||
BPUM_1964___p 2692 AATCGAAAAGA-AAATGAATAA 2712
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.