Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03331 and BPUM_1967

See Amino acid alignment / Visit BSNT_03331 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:49
# Commandline: needle
#    -asequence dna-align/BSNT_03331___dnaD.1.24716.seq
#    -bsequence dna-align/BPUM_1967___dnaD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03331___dnaD-BPUM_1967___dnaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03331___dnaD-BPUM_1967___dnaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03331___dnaD
# 2: BPUM_1967___dnaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 771
# Identity:     472/771 (61.2%)
# Similarity:   472/771 (61.2%)
# Gaps:         138/771 (17.9%)
# Score: 1390.5
# 
#
#=======================================

BSNT_03331___      1 ATGAAAAAACAGCAATTTATTGATATGCAGGAGCA----GGGAACATCAA     46
                     |||||.|..||||||||||||.||||||   ||||    |||    ||.|
BPUM_1967___d      1 ATGAATAGGCAGCAATTTATTAATATGC---AGCAAATGGGG----TCGA     43

BSNT_03331___     47 CCA---TCCCCAATCTTCTGCTTACGCATTATAAACAGCTTGGGCTTAAT     93
                     |||   |.||.|||.|.|||.||.|.||||||.|.|||.|.||.||.|||
BPUM_1967___d     44 CCAGTTTGCCTAATTTGCTGATTGCTCATTATGAGCAGTTAGGACTGAAT     93

BSNT_03331___     94 GAAACAGAACTTATTCTGCTGTTAAAAATTAAAATGCATTTAGAAAAAGG    143
                     |||.||.||.|.||..||.||.|.||.|||||||||.||..||||.||||
BPUM_1967___d     94 GAATCACAAATGATGGTGATGCTTAAGATTAAAATGAATGAAGAACAAGG    143

BSNT_03331___    144 ATCATATTTTCCTACACCGAATCAGCTGCAG--------GAAGGTATGTC    185
                         |.|.|||.|.|    ||.||..||.||        .|.||.|||.|
BPUM_1967___d    144 ----TGTGTTCTTTC----AAACATTTGAAGAGCTTTCCCATGGGATGAC    185

BSNT_03331___    186 AATTTCTGTTGAAGAATGCACAAACAGATTGCGGAT-----------GTT    224
                     .|||||.|.||||||.||           ||||.||           .||
BPUM_1967___d    186 CATTTCAGCTGAAGAGTG-----------TGCGTATATGGTTCAGCATTT    224

BSNT_03331___    225 TATTCAAAAAGGCTTTCTGTTTATTGAAGAATGC-----GAGGATCAAAA    269
                     .|||||||||||.|||.|.|..|||.|     ||     ||||      |
BPUM_1967___d    225 AATTCAAAAAGGATTTATTTCGATTCA-----GCCGTTTGAGG------A    263

BSNT_03331___    270 CGG----------CATCAAATTTGAGAAATATTCTCTTCAGCCTTTATGG    309
                     |||          ||.||    |||....||.||..||.||||.||||||
BPUM_1967___d    264 CGGGTCTGGTATTCAGCA----TGACCGTTACTCAGTTGAGCCATTATGG    309

BSNT_03331___    310 GGGAAGCTGTACGAATATATTCAGCTTGCACAGAATCAAACACAGGAAAG    359
                     ||...|.||||.||.|.|.|..||   |||   ||.|||.|..|||||.|
BPUM_1967___d    310 GGCGTGTTGTATGACTTTTTAGAG---GCA---AAACAAGCGAAGGAAGG    353

BSNT_03331___    360 ---AAAA------GCAGAAGGGGAACAAAAAAGCCTTTATA--CCATTTT    398
                        ||||      |.|.|||     |..|||||.|||||||  |..|.||
BPUM_1967___d    354 TCAAAAACTCCATGTACAAG-----CTGAAAAGTCTTTATATGCTTTATT    398

BSNT_03331___    399 TGAGGAAGAGTTCGCAAGGCCGTTATCGCCT-TTGGAGTGTGAAACGCTG    447
                     |||.||.||.||.|..||||||.|.||.||| |||.|| |.|||||.||.
BPUM_1967___d    399 TGAAGATGAATTTGGCAGGCCGCTTTCTCCTCTTGAAG-GAGAAACACTC    447

BSNT_03331___    448 GCGATCTGGCAGGACCAGGATCAGCATGACGCACAACTGATCAAACACGC    497
                     .|.||||||..|||.||.||.||.|||||.||..||.|||||...|..||
BPUM_1967___d    448 TCCATCTGGATGGATCAAGACCATCATGATGCTGAAATGATCCGCCTAGC    497

BSNT_03331___    498 GTTAAAAGAGGCTGTACTATCAGGAAAACTCAGTTTCCGCTACATTGACC    547
                     .||||.|||.||.||..|||||||||||.|.|.||||||.||.||.||||
BPUM_1967___d    498 ATTAAGAGAAGCGGTGTTATCAGGAAAATTAAATTTCCGTTATATCGACC    547

BSNT_03331___    548 GCATTTTGTTTGAATGGAAGAAAAACGGGCTTAAAACTGTGGAGCAGGCA    597
                     |.|||.|||||||.|||||.||.||.|||||.|||||.|.|||..|.|||
BPUM_1967___d    548 GAATTCTGTTTGAGTGGAAAAAGAAAGGGCTGAAAACAGCGGAAGAAGCA    597

BSNT_03331___    598 AAAATACACAGCCAAAAATTCCGGCGTGTAC-AAGCAAAGCAAAATGAAC    646
                     |||...||.|||||..|.||||     ||.| .||||||        ||.
BPUM_1967___d    598 AAAGAGCATAGCCAGCATTTCC-----GTTCTCAGCAAA--------AAG    634

BSNT_03331___    647 CGC---------AAAAAGAG---------TATAAAAGGCAGGTTCCTTTT    678
                     |||         ||.|||||         |||||..|.||.|||||||||
BPUM_1967___d    635 CGCCACCTTCAAAAGAAGAGGCGTCAACATATAAGCGACAAGTTCCTTTT    684

BSNT_03331___    679 TACAATTGGCTTGAACAATAA    699
                     ||.||||||||.|||||||||
BPUM_1967___d    685 TATAATTGGCTGGAACAATAA    705


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.