Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03337 and BPUM_1971
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:50
# Commandline: needle
# -asequence dna-align/BSNT_03337___dinG.1.24716.seq
# -bsequence dna-align/BPUM_1971___dinG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03337___dinG-BPUM_1971___dinG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03337___dinG-BPUM_1971___dinG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03337___dinG
# 2: BPUM_1971___dinG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3116
# Identity: 1839/3116 (59.0%)
# Similarity: 1839/3116 (59.0%)
# Gaps: 643/3116 (20.6%)
# Score: 4789.0
#
#
#=======================================
BSNT_03337___ 1 ATGAATAAGCAACGGTTCGTTGTTATAGATGTAGAGACAACAGGGAATTC 50
|||....|.|||.||||.|||||..|.|||.|.||.||.||.||||||||
BPUM_1971___d 1 ATGGCCGATCAAAGGTTTGTTGTCGTTGATATTGAAACCACCGGGAATTC 50
BSNT_03337___ 51 GCCGAAGAAAGGCGATAAAATCATACAAATCGCAGCGGTTGTAATCGAAA 100
.||.||.||.||.|||||||||||.|||||.||.|||||.||.||.||||
BPUM_1971___d 51 ACCCAAAAAGGGTGATAAAATCATTCAAATTGCTGCGGTGGTCATTGAAA 100
BSNT_03337___ 101 ATGGACAAATTACTGAGCGGTTTTCAAAATACATTAATCCAAATAAATCA 150
|||||||||||...||.||||.|||||||||..|.||.||....|||.|.
BPUM_1971___d 101 ATGGACAAATTGTCGAACGGTATTCAAAATATGTGAACCCGGGAAAACCG 150
BSNT_03337___ 151 ATCCCTGCTTTTATTGAGCAGCTTACTGGAATCTCTA--ATCAAATGGTC 198
|||||.|..||||||||.|||||.||.||.|| || | |.||.|||||.
BPUM_1971___d 151 ATCCCAGGATTTATTGAACAGCTGACAGGCAT-TC-AGCAGCATATGGTT 198
BSNT_03337___ 199 GAGAATGAACAGCCATTTGAAGCAGTTGCTGAAGAAGT-----ATTCCAA 243
||..|||....|...|||||.|...||||..||||.|| ||..||
BPUM_1971___d 199 GACGATGCGGTGTTTTTTGAGGATATTGCCCAAGAGGTGTATGATCTCA- 247
BSNT_03337___ 244 TTGCTTGACGGCGCTTATTTTGTCGCACACAATATCCATTTTGACCTTGG 293
||.|.||||||||||||||.||.||||||.|.|||||||| ||||.
BPUM_1971___d 248 ----TTCAAGGCGCTTATTTTGTTGCGCACAATGTTCATTTTGA-CTTGA 292
BSNT_03337___ 294 ATTTGTCAAGT-ATGAGCTA----CATAAGGCGGG--CTTTCAGCTCCCA 336
||||.|.||.| ||||.||| ||| ||||| ...|.||||
BPUM_1971___d 293 ATTTTTTAAATGATGAACTAAAAGCAT---GCGGGAAAAATGAGCT---- 335
BSNT_03337___ 337 GATTGTG-AAGTGCTTGATACTGTCGAGCTCTCACGTATTGTTTTTCCGG 385
|..|||| .||.|.|||||||.||.||..|.||..|.|||.|||.|||.|
BPUM_1971___d 336 GGATGTGCTAGCGATTGATACAGTTGAAATTTCTAGAATTCTTTATCCAG 385
BSNT_03337___ 386 GATTTGAAGGGTATAAGCTGACGGAATTAAGCGAGGAGCTTCA-GCTGCG 434
...|||||||.||||||||.||.|||.|||||||.|||| ||| |||.|.
BPUM_1971___d 386 AGCTTGAAGGCTATAAGCTCACTGAACTAAGCGAAGAGC-TCATGCTTCC 434
BSNT_03337___ 435 GCATGATCAGCCGCACCGGGCTGACAGCGATGCTGAAGTGACAGGGC--- 481
.|||||.||.||||||.||||.||.||.|||||.|||||.|| .||
BPUM_1971___d 435 ACATGACCACCCGCACAGGGCGGATAGTGATGCGGAAGTTAC--TGCTAT 482
BSNT_03337___ 482 -TTATTTTTTTGGAAATCCTTGAAAAGCTGCGGCAGCTTCCTTA-TCCGA 529
|||||||| || ||||| |||..
BPUM_1971___d 483 GTTATTTTT---------------AA-------------CCTTACTCCAT 504
BSNT_03337___ 530 C-ATTAAAGCAGTTA------AGAA--GGCTTTCGCAGC-------ATT- 562
| |||||.||| || |.|| .|||...||||| |||
BPUM_1971___d 505 CAATTAACGCA--TACACCGCAAAATGTGCTAAAGCAGCTGCGTAGATTA 552
BSNT_03337___ 563 TCATCAGTGATCTGACGCATTT--GTTGGATAT----GTTCATTAA---- 602
||.|| |.|||| ||| || ||||| .|| ||||
BPUM_1971___d 553 TCCTC--TTATCT------TTTAAGT--GATATAGGACTT--TTAATCCA 590
BSNT_03337___ 603 ------TGAAAACAGACATACCGA--GATACCGGGCTATACGCG------ 638
||||| ||| ||| ||||..||||
BPUM_1971___d 591 GCAGCTTGAAA----------CGAGTGAT-----GCTAGCCGCGAAAATT 625
BSNT_03337___ 639 CTTTTCT----------TCGTTTTCTGTCAGAGA----AC-----CTGAA 669
|.||..| ||.|||.||||.|.||| || |||||
BPUM_1971___d 626 CATTGGTAGAAGTCGGCTCTTTTGCTGTTAAAGATGTCACCAATTCTGAA 675
BSNT_03337___ 670 GCTATCGATGTTCGTATAAAT---------GAGGACGA-GAACTTCTCAT 709
|..|| |.|| |.|||| ||.||||| ||||..|| .|
BPUM_1971___d 676 ---AAGGA--TACG-ACAAATTCAGTAGGGGAAGACGATGAACAGCT-GT 718
BSNT_03337___ 710 TTGAGATCGAAAGCTGGGAAGCGGGAAATGAAAAAG-CGCTGTC----AG 754
|||| |||.||.|||||| .||||.| |.
BPUM_1971___d 719 TTGA-------------------GGAGATCAAAAAGAAGCTGCCCCAAAC 749
BSNT_03337___ 755 AGT-TAATGCCTGGGTATGAAAAAAGAGACGGCCA----AATGATGATGA 799
||| .|| ||.||||||..||||||.||.|| || ||||||||
BPUM_1971___d 750 AGTGGAA-----GGCTATGAAGTAAGAGAAGGACAGCTCAA-GATGATGA 793
BSNT_03337___ 800 ------TGAGAGAGGTGGCTGATGCGTTTGCCAATCGTGAGC--ATGCGC 841
|||||||.|||..|.||| || .|||| ||||..
BPUM_1971___d 794 ATAAAGTGAGAGATGTGTTTCATG--------AA---AGAGCTTATGCTT 832
BSNT_03337___ 842 TGATTGAAGCTCCTCCAGGCATCGGAAAAACGATTGGCTATCTTATTCCG 891
|.||||||||..|.|||||.||||||||||||.|.|..||.||.||.||.
BPUM_1971___d 833 TAATTGAAGCGGCACCAGGTATCGGAAAAACGCTCGCGTACCTCATACCA 882
BSNT_03337___ 892 GCTGCGCTTTTT----GCCAAGAAATCAAAAAAGCCGGTCATAATCAGCA 937
||||| .|| ||.|||||||||..|||.||.||.||.||.||.|
BPUM_1971___d 883 GCTGC----ATTAGAAGCAAAGAAATCAGGAAAACCTGTTATTATTAGTA 928
BSNT_03337___ 938 CGTATTCGACGCTTTTACAGCAGCAGATTCTCACAAAG-GATTTGCCGAT 986
|.|||||.|..|||||.||||||||.||.|| .||..| |||.|||||||
BPUM_1971___d 929 CATATTCCATTCTTTTGCAGCAGCAAATGCT-TCAGCGCGATATGCCGAT 977
BSNT_03337___ 987 TGTCCAAGATC---TGTTTCCATTTCCGGTAACAGCGGC-----GATTTT 1028
|.| |.||| ||.|.|||||| |.|.||||.|| .||||
BPUM_1971___d 978 TTT---AAATCAATTGCTCCCATTT---GAACCAGCAGCCTGTGTATTT- 1020
BSNT_03337___ 1029 AAAAGGGCAATCGCATTATTTATGCCTGTATAAATTTGAGCAGGTGCTTC 1078
|||||.|...||||||||.|.|||.|..||||.||||||||.||.||.|
BPUM_1971___d 1021 -AAAGGTCGGGCGCATTATATTTGCTTAGATAAGTTTGAGCATGTACTGC 1069
BSNT_03337___ 1079 ATGAAGAAGATGATAATTATGATGCCGTACTGACAAAGGCACAGCTTCTC 1128
||||.|||||||||||.|||||||..||..|.||.|||||.||..|..|.
BPUM_1971___d 1070 ATGAGGAAGATGATAACTATGATGTGGTCTTAACGAAGGCGCAAATATTA 1119
BSNT_03337___ 1129 GTTTGGCTGACAGAGACAAATACAGGAGATGTAGCGGAACTGAATTTGCC 1178
.|.|||||....|..|||.|.||.||.|||.||.|.||.||.|||||.||
BPUM_1971___d 1120 ATGTGGCTCCTTGTAACAGAAACGGGTGATTTATCTGAGCTAAATTTACC 1169
BSNT_03337___ 1179 TTCAGGCG--------------GA--AAATTGCTGTGGGACAGATTGGCT 1212
.||.||.| || .||||.| |||.| .||.
BPUM_1971___d 1170 GTCGGGAGCTGCCAATATCAAAGACCGAATTTC-GTGCG-------TGCA 1211
BSNT_03337___ 1213 TATGACGATGACTCCTATAAAAGAAGTCGCAGTGAGCATGTGATCGGT-- 1260
.|||.||.|.|| ||..||.||| ||| ||||
BPUM_1971___d 1212 CATGCCGTTTAC----ATCGAAAAAG-CGC--------------CGGTTT 1242
BSNT_03337___ 1261 ------------TTTTACGAGC------------GGGCC-AAACAGATTG 1285
|||||.|||| ||||| ||||||
BPUM_1971___d 1243 AAAGAATACTGCTTTTATGAGCGTGCGAAAAGAAGGGCCAAAACAG---- 1288
BSNT_03337___ 1286 CTTTGCGTTCCGATTTGGTGATCACCAATCA-----TTCTCTTTTGCTGA 1330
|.|||||..|..|.||.||||| |.|||||.|
BPUM_1971___d 1289 ---------CTGATTTAATTTTAACAAATCATCGCCTGCTCTTAT----- 1324
BSNT_03337___ 1331 CCGATGAAGGCAGCCAGAAAAAAAGG----------CTTCCCGAAAGCGG 1370
||.|||...||| |||.|.|.|.||.|
BPUM_1971___d 1325 --------------CACAAACGGAGGCATCATCTATCTTTCAGCATGCAG 1360
BSNT_03337___ 1371 CAC--ATTTATTATTGATGAAGCACACCATTTTG----AACGTGCGGCAA 1414
|| ||.|.|.|||||.||.||.|||||.|||| ||| |
BPUM_1971___d 1361 -ACGTATATGTGATTGACGAGGCTCACCAATTTGAGAAAAC--------A 1401
BSNT_03337___ 1415 GC----GAACATTTAGGGAAAAGAGCTACGTACATAGAATTGCATACGAA 1460
|| |||....|||||.|.||.||..||||.||..|..|.|||.||||
BPUM_1971___d 1402 GCCAATGAAACGCTAGGGGATAGCGCGTCGTATATCCAGCTTCATGCGAA 1451
BSNT_03337___ 1461 ATTGA-GCAGAATCGGCACTCTGA-AGGAGCAGGGACTTCTAAAAAAGAT 1508
|||.| |||| .|.|||.| ||.| ||| || ||..|..||||.|||.|
BPUM_1971___d 1452 ATTAACGCAG-CTTGGCTC-CTTACAGG-GC--GGTTTGTTAAAGAAGCT 1496
BSNT_03337___ 1509 GAGACAGCTATTCCAGCGAAACAGCCTGCCGGTT--------GATTCATT 1550
||.|.|...|||.|| || ||.||||.| ||..|.||
BPUM_1971___d 1497 GAAAAAAAGATTTCA-CG-------CTTCCGGCTTACAGACGGACACCTT 1538
BSNT_03337___ 1551 TTTCGAATTGGAAGAGTGGCTTCAGCACGTTCAAGCAGAAAGTGATGCTT 1600
|.|||||.||||.||||..|||||.||..|||||...||||||||.||.|
BPUM_1971___d 1539 TATCGAAATGGATGAGTATCTTCATCAGCTTCAAATGGAAAGTGACGCCT 1588
BSNT_03337___ 1601 TCTTCAGCTCTGTACATTCTTTTGTCAAACGAAGAAAACCTAAAGAAGAC 1650
|.||.||..|.||.|||||||||||||||.|.|.||||||.||||.||||
BPUM_1971___d 1589 TTTTTAGTACCGTCCATTCTTTTGTCAAAAGGACAAAACCAAAAGCAGAC 1638
BSNT_03337___ 1651 TTAAACCGTC-------TAGTGTTTAAGGTGAACA----AAGAAAGC-CA 1688
.|.||.|||| |||.|| |.||.|.|| |||.|.|| ||
BPUM_1971___d 1639 ATCAATCGTCTCATTCATAGAGT---ACGTCATCAGTCGAAGCATGCGCA 1685
BSNT_03337___ 1689 GGATAAAAGCTGGTCGATCTTAACAGATGGTGCGGAGAG---GCTTTGTT 1735
|...|||.| ||| |.||.||| |||..|| ||||||||
BPUM_1971___d 1686 GTGGAAACG------GAT-TAAAGAGA-----CGGCAAGTAAGCTTTGTT 1723
BSNT_03337___ 1736 CCATGCTGACACATTTGC-----AGCAGCTTTTTG----------AGGCG 1770
||.||.| |.|||| |..||||.|.|| |.|||
BPUM_1971___d 1724 CCTTGTT-----AATTGCTTGTGAAAAGCTGTATGAACAGCAAAAAAGCG 1768
BSNT_03337___ 1771 CAGTCATCCCTTATGGAAAAACATTTGAAGGGTATGAA--GAGCAAAAC- 1817
|| |||.|..|||| |||.| ||.|| || ||.|||
BPUM_1971___d 1769 -AG------CTTCTTCAAAA-------AAGTG-ATCAACTGA-CAGAACA 1802
BSNT_03337___ 1818 -----CGTCTTTTTAGCCGATGAATACCA--AAGAAGCATGAAAGGCT-- 1858
|| |||..|||.||.||||||.| ||| ||| |
BPUM_1971___d 1803 CTTTGCG--TTTGAAGCAGAGGAATACGATCAAG-----TGA-----TGT 1840
BSNT_03337___ 1859 ------TGC-AGCATTACTGTCAG-ACGTTGCAGAAGCTCTTCTTTGGGT 1900
||| |.|||| |..||| |||.||.|...|.||.|.||||...
BPUM_1971___d 1841 CGTTTATGCAAACATT--TTGCAGTACGCTGTACCGGTTCATTTTTGAAC 1888
BSNT_03337___ 1901 CTGATGACGATGAAGCGGTTTGGATTGAAATAGATGCAAAGGGTGCGAAA 1950
|..|..||||||||.|||||||||||||.||.||||||||||||||.|||
BPUM_1971___d 1889 CGAAAAACGATGAAACGGTTTGGATTGAGATTGATGCAAAGGGTGCCAAA 1938
BSNT_03337___ 1951 AATGCAGTGGCCATTT----ACGCACAGCCTCTTGAACCTGGTGAACTTC 1996
||.||.|| .||| |.||||||||.||.||..||||.||.|||.
BPUM_1971___d 1939 AACGCTGT----CTTTATGCATGCACAGCCGCTAGATACTGGCGAGCTTT 1984
BSNT_03337___ 1997 TGGCTGATCAGTTTTTCGCGCGCAAAAATAGTGTGGTGCTGACATCTGCA 2046
|.||.||||..|||||...|..||||||.|||||.||.||.|||||.|..
BPUM_1971___d 1985 TAGCAGATCGCTTTTTTATGAACAAAAAAAGTGTTGTTCTCACATCAGGG 2034
BSNT_03337___ 2047 ACCCTTACAGTCGAAGGT-TCTTTTCAATTTATGATT-GAACGACTGGGA 2094
||.||.|||.||.|.||| .|||| .|||..||.|| ||||||.|.||.
BPUM_1971___d 2035 ACACTGACAATCAATGGTCGCTTT--GATTATTGCTTAGAACGATTTGGT 2082
BSNT_03337___ 2095 CTG-AGTGACTTTTTCCCGCGGACAAT------GAGAATTGAGTCACCTT 2137
||| || |||||||..|||| || .|| |||||.|||||.|
BPUM_1971___d 2083 CTGCAG-GACTTTTATCCGC-----ATCTTGTCCAG-ATTGAATCACCGT 2125
BSNT_03337___ 2138 TT--TCTT-----ACGATGAGCGTATGCAGGTAATGATTCCAAAGGAAAT 2180
|| .||| || ||| |..||||.||..|.|||...||.||
BPUM_1971___d 2126 TTGAACTTGAAAAAC----AGC---TCAAGGTGATTGTGCCAGCTGATAT 2168
BSNT_03337___ 2181 GAAATCAATTCAGGATACCGGG--CAACCTGAATTTATACAGGATACAGC 2228
|....|.||| |.|| ||||.| .|.|..||.|.|.||.||.|..|||.
BPUM_1971___d 2169 GCCGCCGATT-ACGA-ACCGTGATGAGCGCGACTATGTAAAGCAATCAGT 2216
BSNT_03337___ 2229 CCGTTATATCGAACTGATGGCAAAGGAAAAACAGCCTAAAATCCTTGTGC 2278
.||.||.||..|..||||||.||||.|..|.|||.|.||.||..|.|||.
BPUM_1971___d 2217 ACGGTACATTAAGTTGATGGAAAAGCAGCACCAGGCGAAGATATTGGTGT 2266
BSNT_03337___ 2279 TGTTTACATCCCATGATATGCTGAAAAAG--GTTCACCAGGAGCTCAAGC 2326
||||||..||.|||||.|||.| ||||| ||..|..|.||.||.||
BPUM_1971___d 2267 TGTTTAATTCACATGAGATGTT--AAAAGCAGTATATGATGAACTGAA-- 2312
BSNT_03337___ 2327 ATAACATGAGTGCTTCCGGCATTCAG--CTCTTGGCACAAGGGATTACAG 2374
||||..||.|.| |||..|.| ||.||.||.|||||..|.||.|
BPUM_1971___d 2313 --AACAGAAGGGAT----GCAAGCTGCCCTTTTTGCTCAAGGTTTGACGG 2356
BSNT_03337___ 2375 GCGGGAGTCCCGGCAAACTGATGAAGACTTTTAAAACATCCAATCAGGCG 2424
|.||.|||||.|..|||.|.|.|||||..||||||..|.|.||.||.|||
BPUM_1971___d 2357 GTGGTAGTCCTGTTAAATTAACGAAGATGTTTAAATTAGCAAAACATGCG 2406
BSNT_03337___ 2425 ATCCTGCTCGGAACAAATCATTTTTGGGAAGGCGTTGATTTCCCTGGTGA 2474
||..|.||.||.||...|..||||||||||||.||.|||||.|||| ||
BPUM_1971___d 2407 ATTTTACTTGGTACGGGTAGTTTTTGGGAAGGTGTCGATTTTCCTG--GA 2454
BSNT_03337___ 2475 T--GAGCTGACAACAGTAATGAT----CGTGAGGCTCCCATTCCGGTCCC 2518
| ||||||||||||||.||.|| ||| ||.||.||.||..|.|
BPUM_1971___d 2455 TCAGAGCTGACAACAGTCATTATGGCACGT----CTTCCGTTTCGACCGC 2500
BSNT_03337___ 2519 CTGA-TCACCCGCTTCATGCTGCAAAATGTGA-GCTAGCCCGCAAAAAA- 2565
|||| ||| ||||||..||..||||||||||| | ||||.|||||
BPUM_1971___d 2501 CTGATTCA-CCGCTTATTGAAGCAAAATGTGATG-----CCGCTAAAAAA 2544
BSNT_03337___ 2566 ---GGAAAGAATCCGTTTCAAACAGTGTCATTACCGGAAGCTGTGCTGAC 2612
||.||.|||||||||.||.|.||..|..|.||.|||||||||.|.||
BPUM_1971___d 2545 CAGGGCAAAAATCCGTTTAAAGCCGTTGCTCTCCCAGAAGCTGTGTTAAC 2594
BSNT_03337___ 2613 CTTCAGGCAAGGAATCGGACGCTTGCTGCGTTCTGCGGGAGACAAGGGAA 2662
|||.|..|||||....|||||||||||.||.||||....|||||..||.|
BPUM_1971___d 2595 CTTTAAACAAGGTGCAGGACGCTTGCTACGCTCTGAAAAAGACATAGGCA 2644
BSNT_03337___ 2663 CGATT-ATGATATTGGACAGACGGATTAAAACCGCTGGT--TACGGCCGG 2709
| ||| .|.||.||.|||.|.||..|.|||||||| || ||.||...|
BPUM_1971___d 2645 C-ATTGCTCATTTTAGACCGCCGAGTGAAAACCGC--GTCATATGGAAAG 2691
BSNT_03337___ 2710 CTGTTTCTTGATGCCTTGCCGACAACCTCA-------GTATC-CGAAATG 2751
||.|||.|.||..| ||..||||| || || |||.|||
BPUM_1971___d 2692 CTATTTTTAGAATC-------ACTCCCTCACGCGCCGGT-TCACGAGATG 2733
BSNT_03337___ 2752 ACTGACAGCGA---GCTTGAAGCTTATGTTGCAGGGGA-----------A 2787
|| .||.|| .|||||.||.|||.| ||.||| |
BPUM_1971___d 2734 AC---AAGAGAATCACTTGAGGCGTATAT---AGAGGAGCTCAACAACGA 2777
BSNT_03337___ 2788 AAAG-------AATAA 2796
|||| .||||
BPUM_1971___d 2778 AAAGCCGCTGTCATAA 2793
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