Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03343 and BPUM_1975
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:51
# Commandline: needle
# -asequence dna-align/BSNT_03343___birA.1.24716.seq
# -bsequence dna-align/BPUM_1975___birA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03343___birA-BPUM_1975___birA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03343___birA-BPUM_1975___birA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03343___birA
# 2: BPUM_1975___birA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1076
# Identity: 679/1076 (63.1%)
# Similarity: 679/1076 (63.1%)
# Gaps: 190/1076 (17.7%)
# Score: 1940.0
#
#
#=======================================
BSNT_03343___ 1 ATGCGGTCAACATTAAGAAAA-GACCTT-ATTGAATTATTT------TCT 42
|||||.|||.||.|.|||||| || || ||||||.||||| |||
BPUM_1975___b 1 ATGCGATCAGCAATTAGAAAACGA--TTAATTGAACTATTTACAGCATCT 48
BSNT_03343___ 43 CAGGCAGGCAATGAA-TTTATTTCCGGCCAAAAAATCAGTGATGCTCTCG 91
||.|| ||| |||.|.||..|.||..||||..||||||..||.|
BPUM_1975___b 49 -----AGTCA--GAACTTTGTCTCGAGTCAGCAAATATGTGATGAGCTTG 91
BSNT_03343___ 92 GCTGTTCAAGAACTGCTGTGTGGAAGCATATTGAAGAGCTT-CGGAAAGA 140
|.|||||..||||.|||||.|||||||||||.||.|| ||| .|.|||||
BPUM_1975___b 92 GTTGTTCTCGAACAGCTGTTTGGAAGCATATGGAGGA-CTTGAGAAAAGA 140
BSNT_03343___ 141 GGGTTATGAAGTAGAAGCCGTTAGAAGAAAAGGATATCGGCT-CATCAAA 189
||||||||||||||||||.||.|||||||||||.|||||.|| |.||..|
BPUM_1975___b 141 GGGTTATGAAGTAGAAGCTGTCAGAAGAAAAGGTTATCGTCTGCTTCGTA 190
BSNT_03343___ 190 AAACCCGGA-AAACTCAGTGAAAGCGAAATTCGTTTTGGATTAAAAACGG 238
|| ||||| |||.|.|||||...||||||||..|||||..||.|.||.|
BPUM_1975___b 191 AA--CCGGACAAAATTAGTGAGGACGAAATTCTATTTGGTCTAGACACAG 238
BSNT_03343___ 239 A-AGTGATGGGCCAG---CATCTTATTT--ACCATGACGTTCTTTCAAGC 282
| |||..||| ||| ||| .||||| |..|.||.| ||.||..|
BPUM_1975___b 239 AGAGTTTTGG--CAGACACAT-ATATTTTCAGAAAGAAG---TTGCATCC 282
BSNT_03343___ 283 ACGCAAAAAACGGCT-------CATGAGCTCGCGAATAATAACT-CACCG 324
||.|| ||| |||||.||.|..|||.| |..| ||||.
BPUM_1975___b 283 ACCCA-------GCTGATTGCCCATGATCTTGTAAATGA-AGGTGCACCC 324
BSNT_03343___ 325 GAAGGCACCCTCGTGGTGGCTGA----CAAACAAACAGCCGGAAGGGGCC 370
.|.|||||.|||||.||...||| ||.||||| |||||..||||
BPUM_1975___b 325 CACGGCACGCTCGTTGTCAGTGATCACCAGACAAA----CGGAAAAGGCC 370
BSNT_03343___ 371 G-----AATGTCTAGGGTATGGCATTCTCAAGAAGGAAACGGCGTTTGGA 415
| ||.|| |..||||||||.|.|.|.||.|..|||.|.||||
BPUM_1975___b 371 GCCTTCAACGT-----GCGTGGCATTCACCAAATGGGACAGGCATCTGGA 415
BSNT_03343___ 416 TGAGCCTGATTTTGCGGCCTGACATTCCGCTCCAAAAAACACCGCAGCTG 465
||||.||.|||.|.||.|||||.|||||.||.||.|||.|.||||||.||
BPUM_1975___b 416 TGAGTCTCATTCTACGACCTGAAATTCCTCTGCATAAAGCGCCGCAGATG 465
BSNT_03343___ 466 ACTCTGCTTGCTGCAGTAGCTGTTGTGCAGGGAATAGAAGAGGCAGCAGG 515
||.||..|.||..|.|||||..| .||||.||.
BPUM_1975___b 466 ACGCTTTTGGCATCTGTAGCCAT------------------CGCAGAAGC 497
BSNT_03343___ 516 CAT------CCAAAC-GGA-----------TATTAAATGGCCAAATGATA 547
||| |||||| ||| .|||||||||||||||||||
BPUM_1975___b 498 CATTAAAGACCAAACAGGACTCAGACCTTCGATTAAATGGCCAAATGATA 547
BSNT_03343___ 548 TTTTGATT-AACGGAAAAAAAACAGTCGGCATCCTAACGGAAATGCAGGC 596
|||| ||| ||.||.|||||....||.|||||..|.||.|||.|..|.||
BPUM_1975___b 548 TTTT-ATTAAATGGCAAAAAGGTCGTTGGCATTTTGACTGAATTAAAAGC 596
BSNT_03343___ 597 TGAAGAAGACCGCGTACGTTCA----GTGATCATTGGGATC-GGCATTAA 641
.||.|..|||| |.||||| |||||.||| |||.| ||||||||
BPUM_1975___b 597 AGAGGCGGACC----AGGTTCATGCGGTGATTATT-GGACCGGGCATTAA 641
BSNT_03343___ 642 CGTTAACCAGCAGCCTAATGATTTTCCAGATGAATTGAAGGACATCGCGA 691
.||.|||||...|.||.||||||||||.||||||.|.||..|..||||.|
BPUM_1975___b 642 TGTGAACCAAACGGCTGATGATTTTCCTGATGAACTAAAAAATGTCGCCA 691
BSNT_03343___ 692 CAAGCCTCAGCCAAGCTGCTGG-------GGAAAAAATTGATCGGGCCGG 734
|.||||| ||.|| ||| .||.|||.|.||.||.| |.|
BPUM_1975___b 692 CGAGCCT--GCGAA-----TGGAACTTAATGACAAAGTGGACCGTG-CTG 733
BSNT_03343___ 735 CG-TCATCCAGCATATTTTACTATG-----CTTTGAGAAACGGTACCGGG 778
|| |||||||.||.|| .||| ||||||.|||.|.||....|
BPUM_1975___b 734 CGCTCATCCAACAGAT-----CATGTCCACCTTTGAAAAAAGATATGCTG 778
BSNT_03343___ 779 ATTATATGACGCACGGATTTACGCCGATTAAGCTTTTATGGGAAAGCTAT 828
|||||||.|.|||.||||||.||||.|||||.|..|||||||||...|||
BPUM_1975___b 779 ATTATATAAAGCATGGATTTGCGCCCATTAAACAATTATGGGAATCGTAT 828
BSNT_03343___ 829 GCG------CTCGGT-ATTGGCACTAATATGAGAGCCAGAACGTTAAACG 871
||| .||||| | ||| ||.|.|| |||.|.||..|.||.|
BPUM_1975___b 829 GCGATGACAATCGGTCA---GCA-TATTGTG---GCCCGCACCGTCAATG 871
BSNT_03343___ 872 G--AACCTTTTAC---GGGAAGGCGTTAGGTATAGATGATGAAGGCGT-- 914
| || ||| ||.||.|||.|.||.||..||||.|||||.||
BPUM_1975___b 872 GGCAA-----TACACTGGAAAAGCGCTCGGAATCAATGAAGAAGGTGTAT 916
BSNT_03343___ 915 --TCTGCTTTTAGAAACGAACGAAGGCATTAAAAAAATCTATTCTGCCGA 962
| ||||| ||||||.|.|||||.||..||||||||||.||.||.||
BPUM_1975___b 917 TAT-TGCTT---GAAACGGAGGAAGGGATCCAAAAAATCTACTCCGCAGA 962
BSNT_03343___ 963 TATCG----------AATTGGGCTAA 978
.|||| ||.| |||
BPUM_1975___b 963 CATCGAGATCAAGTCAACT----TAA 984
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