Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03344 and BPUM_1976

See Amino acid alignment / Visit BSNT_03344 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:51
# Commandline: needle
#    -asequence dna-align/BSNT_03344___cca.1.24716.seq
#    -bsequence dna-align/BPUM_1976___cca.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03344___cca-BPUM_1976___cca.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03344___cca-BPUM_1976___cca.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03344___cca
# 2: BPUM_1976___cca
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1365
# Identity:     777/1365 (56.9%)
# Similarity:   777/1365 (56.9%)
# Gaps:         333/1365 (24.4%)
# Score: 2041.0
# 
#
#=======================================

BSNT_03344___      1 ATGGAAAAAGTTTTTATCAAAGCAC--TTCCC----GTGCTCCGCATCTT     44
                                    ||.||.|.||  |||.|    |.|.|||..||.||
BPUM_1976___c      1 ---------------ATGAATGAACCATTCACACATGCGATCCCTATTTT     35

BSNT_03344___     45 A-AT--------CGAAGCA-GGCCATCAGGCTTATTTTGTCGGAGGCGCA     84
                     | ||        |||| || ||..||||.|||||.||||||||.||.|||
BPUM_1976___c     36 ACATACACTGCACGAA-CATGGATATCAAGCTTACTTTGTCGGCGGAGCA     84

BSNT_03344___     85 GTTCGTGACAG------CTATATGAAACGAACGATCGGAGATGTCGATAT    128
                         ||||.||      .|.||.|.|..|||  |||||.|||.|||||||
BPUM_1976___c     85 ----GTGAGAGATGTCCTTTTAGGCAGGGAA--ATCGGCGATATCGATAT    128

BSNT_03344___    129 CGCGACAGATGCGGCACCTGATCAAGTAGAACGG--------CTGTTTCA    170
                     .||.||.|||||..|.||||||        ||||        .|.|||.|
BPUM_1976___c    129 AGCAACGGATGCAACGCCTGAT--------ACGGTCGAGTCTTTATTTGA    170

BSNT_03344___    171 GCGGACTGTTGATGTAGGCAAAGAGCACGGGACCATTATTGTGCT--CTG    218
                     ....||.||||||||.|||||||||||.||.||..|.||.|||.|  .||
BPUM_1976___c    171 AAAAACAGTTGATGTTGGCAAAGAGCATGGCACGGTCATAGTGTTACATG    220

BSNT_03344___    219 GGAGGATGAAACCTATGAAGTCACGACATTCCGGACTGAATCTGATTATG    268
                     ...|||||  |.||||||.||.|||||.||.||.||||||||.||.||||
BPUM_1976___c    221 ATGGGATG--AGCTATGAGGTGACGACGTTTCGAACTGAATCAGAATATG    268

BSNT_03344___    269 TTGATTTCAGAAGACCGTCAGAAGTGCAATTTATCTCATCATTAGAA-GA    317
                     ..|||||..|.||.|||..|||||||...||||||.||||.|| ||| ||
BPUM_1976___c    269 AAGATTTTCGCAGGCCGAAAGAAGTGGCGTTTATCACATCCTT-GAAGGA    317

BSNT_03344___    318 GGATCTAAAACGCAGAGATTTAACGATCAATGCGATGGCCATG-----AC    362
                     .|||||...|.|.||||||||||||||||||||||||||||||     | 
BPUM_1976___c    318 AGATCTTTTAAGAAGAGATTTAACGATCAATGCGATGGCCATGGATATA-    366

BSNT_03344___    363 AGCGGACGGGAAGGTGCTTGATTATTTTGGCGGCAAGAAAGATATTGATC    412
                     |..|||   ||| .|..||||..||.||||.|||||..|.||||||||.|
BPUM_1976___c    367 AATGGA---GAA-ATCATTGACCATGTTGGGGGCAAACAGGATATTGAGC    412

BSNT_03344___    413 AGAAAGTGATTCGAACCGTTGGAAAGCCTGAGGATAGATTTCAAGAGGAT    462
                     .||||...||||.||||||.|||.|.||||.|....|.|||||.||.|||
BPUM_1976___c    413 GGAAACGAATTCAAACCGTAGGAGATCCTGCGTGCCGCTTTCAGGAAGAT    462

BSNT_03344___    463 GCGCTTCGTATGCTGAGAGCCGTACGCTTTATGAGCCAGCTTGGCTTTAC    512
                     ||||||||||||.|||||||..|.||.|||.|.|||||||||||||||..
BPUM_1976___c    463 GCGCTTCGTATGATGAGAGCGATCCGTTTTTTAAGCCAGCTTGGCTTTGA    512

BSNT_03344___    513 GCTTTCACCGGAAACAGAAGAAGCCATTGCGAAAGAAAAATCA-CTCCTC    561
                     |||..|..|.|||||||..|||||.||.|..|||| |.||.|| |||||.
BPUM_1976___c    513 GCTCGCTGCAGAAACAGCTGAAGCAATGGAAAAAG-ATAAGCACCTCCTT    561

BSNT_03344___    562 TCCCATGTTTCAGTCGAACGAAAAACTATAGAGTTCGAGAAATTGCTGCA    611
                     .||.|..|.||.||.|||||.||||    |||.|    |||||       
BPUM_1976___c    562 GCCAACATATCCGTTGAACGCAAAA----AGATT----GAAAT-------    596

BSNT_03344___    612 GGGAAGAGCTTCT-------CG---------CCAGGCGCTTCAAA-CACT    644
                      ||||.|||||.|       ||         .|.|||| .||||| ..||
BPUM_1976___c    597 -GGAAAAGCTTTTAAAAGGACGTTATTGTGAGCGGGCG-ATCAAAGTGCT    644

BSNT_03344___    645 CATTCAAACGAGATTGTATGAAGAGCTTCCTGGTTTTTATCATAAACGA-    693
                     .|||...||.|.|||.||||||||..|.||.||    |.||..|||.|| 
BPUM_1976___c    645 TATTTCTACCAAATTATATGAAGAATTGCCGGG----TCTCGAAAAGGAT    690

BSNT_03344___    694 -----GAAAACCTGATTTCAACGAGTGA-GTTTCC--ATTCTTCTCTTTA    735
                          |.||..||..|||||      || .|||||  |||.||..||..|
BPUM_1976___c    691 CGTCTGCAAGACTCCTTTCA------GACATTTCCGTATTATTTACTGGA    734

BSNT_03344___    736 ACATCCCGTG-------AGGAGCTTTGGGCTGCT------CTTTTAATTA    772
                             ||       ||.|| |.||||..|||      |.|||     
BPUM_1976___c    735 --------TGGGCTGGAAGAAG-TATGGGGGGCTGTCATCCATTT-----    770

BSNT_03344___    773 ACCTTGGCATAGTCTTGAA-AGACGCGCCG--CTTTTCCTGAAAGGTTGG    819
                      .||||||.|||  .|||| |||.| ||||  ||.|||.|.||||..|||
BPUM_1976___c    771 -GCTTGGCTTAG--ATGAAGAGAAG-GCCGTACTCTTCTTAAAAGAATGG    816

BSNT_03344___    820 AAGCTCCCGGGAAAAGTGATCAAGGAAGCCATTCACA-------------    856
                     |||||             .||||..||||.|||.|.|             
BPUM_1976___c    817 AAGCT-------------GTCAACAAAGCTATTGAAAGACGCGGTCGCTA    853

BSNT_03344___    857 -TTGCCGATACGT---TTGGCCAGAGTCTTG-ACGTAAT-----GACAAT    896
                      |.||||||||||   |||          || |.|.|||     ||..||
BPUM_1976___c    854 TTAGCCGATACGTCGATTG----------TGAATGGAATGCGGAGAAGAT    893

BSNT_03344___    897 GTACAGAGCTGGGGAAAAAGCAC-TGC-----TCTCAGC--GGCCAAAAT    938
                     ||....||||||.|||    ||| |||     ||| |||  |   |||||
BPUM_1976___c    894 GTTTGAAGCTGGTGAA----CACGTGCTTTTATCT-AGCTTG---AAAAT    935

BSNT_03344___    939 ATCGCAGCTTCGGCAAAAC--------------------GAAAAACTGGA    968
                     ..|.||.||     |||||                    ||..|.|||||
BPUM_1976___c    936 TACACAACT-----AAAACACGAGCGGCGCATTTTCTTTGACGAGCTGGA    980

BSNT_03344___    969 TGAAAAGAAACTG--AAGGACATTCAGTACGCTTAT----CAAAACCTGC   1012
                     .|        |||  |||       |||  .|||||    ||    ||||
BPUM_1976___c    981 GG--------CTGCCAAG-------AGT--TCTTATGATGCA----CTGC   1009

BSNT_03344___   1013 CGATCAAAAGCCTTAAGGATCTTGATATCACGGGTAAGGACTTGCTTGCG   1062
                     ||||.||||..|||.|.||.||||.|.|..|.||.||.||.||..|.||.
BPUM_1976___c   1010 CGATTAAAACGCTTCAAGACCTTGCTGTTTCAGGAAAAGATTTAATGGCC   1059

BSNT_03344___   1063 CTTCG---AAACCGGCCGGCCGGAAAATGGGTGTCGGAAGAATTACAGCG   1109
                     .||||   |||   |.|..|.||.||||||.|..|.|||           
BPUM_1976___c   1060 TTTCGGCAAAA---GACATCAGGTAAATGGATCGCAGAA-----------   1095

BSNT_03344___   1110 GATCGAGCAGGCTGTTGTGACAGGGAAG-----CTCTCCAATC-------   1147
                         ||||..|.|.|.||||.|  .|||     ||...|||||       
BPUM_1976___c   1096 ----GAGCTTGATTTGGTGAAA--AAAGCCGTACTGCACAATCATTTGGA   1139

BSNT_03344___   1148 ------AAAAGAAACACATAGAGGAGTGGCTGAAGACATGCGGTCAAC--   1189
                           |||||||.| |||||||||||||||.|...||||||.|||.|  
BPUM_1976___c   1140 AAACCGAAAAGAAGC-CATAGAGGAGTGGCTTACCGCATGCGATCAGCAA   1188

BSNT_03344___   1190 ----------ATTAA   1194
                               |||||
BPUM_1976___c   1189 TTAGAAAACGATTAA   1203


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