Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03346 and BPUM_1978
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:51
# Commandline: needle
# -asequence dna-align/BSNT_03346___ypjG.1.24716.seq
# -bsequence dna-align/BPUM_1978___ypjG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03346___ypjG-BPUM_1978___ypjG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03346___ypjG-BPUM_1978___ypjG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03346___ypjG
# 2: BPUM_1978___ypjG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 766
# Identity: 479/766 (62.5%)
# Similarity: 479/766 (62.5%)
# Gaps: 116/766 (15.1%)
# Score: 1346.0
#
#
#=======================================
BSNT_03346___ 1 ATGTATAATG-------CTGACGTTCTTGCTTTTGGCGCCCACAGTGATG 43
||| .|||..|.||||||||.||.|||||.|||||||
BPUM_1978___y 1 -------ATGAAACGACTTGATATCCTTGCTTTCGGAGCCCATAGTGATG 43
BSNT_03346___ 44 ATGTCGAGATCGGAATGGGCGGCACAATAGCGAAGTTTGTCAAACAGGGA 93
|.||.||||||||.||||||||.|| |.|||..|||.|.|.|
BPUM_1978___y 44 ACGTAGAGATCGGTATGGGCGGAAC---------GATTGCAAAATACGTA 84
BSNT_03346___ 94 AAAAAAGTAATG-------------ATATGCGACTTGACAGAAGCGGAAC 130
||||||| | ||.|||||||||||..|.||.|||.
BPUM_1978___y 85 AAAAAAG----GGGCGCGTGTCGGAATTTGCGACTTGACCCAGGCTGAAT 130
BSNT_03346___ 131 TCTCTTCTAACGGTACGGTCAGTTTA----CGTAAAGAAGAAGCAGCTGA 176
|.|||||.||.||.||||| || | |||.||||.|||||| .|
BPUM_1978___y 131 TATCTTCGAATGGAACGGT-AG---AGAGCCGTCAAGAGGAAGCA---AA 173
BSNT_03346___ 177 AGCAGC--CCG-CATATTAGGCG---CAGATAAAAGAATTCAGCTGACGC 220
|||.|| ||| |||.||||||| || |...||||.|||||.||||
BPUM_1978___y 174 AGCGGCTGCCGCCATTTTAGGCGTGTCA---ACGCGAATCCAGCTCACGC 220
BSNT_03346___ 221 TTCCAGACCGCGGCCTAATAATG--AGTGATCAGGCAAT-TCGGTCGATT 267
|.||||||.|.||.|| |.||| |.|||..|.||||| ..||.|| ||
BPUM_1978___y 221 TGCCAGACAGAGGTCT--TTATGTAAATGACGAAGCAATGAAGGACG-TT 267
BSNT_03346___ 268 GTCACTGTCATCAGAACCTGCCGCCCAAAAGCGGTTTTTATGCCGTATAA 317
|..|..||.||..|.||.|.|...||.|||..|.|||||...||||||.|
BPUM_1978___y 268 GCAAGCGTGATTCGTACATACAAACCGAAACTGATTTTTGCTCCGTATCA 317
BSNT_03346___ 318 AAAGGATCGCCATCCGGATCACGGCAATGCGGCTGCACTGGTGGAAGAAG 367
..|.|||||.|||||.|||||.||..||||||.|.||||.||.|||||||
BPUM_1978___y 318 CCAAGATCGGCATCCAGATCATGGTCATGCGGGTACACTTGTTGAAGAAG 367
BSNT_03346___ 368 C-GATCTTTTCCGCCGGAATCCATAAATATAAAGA-TGAAAAAAGCCTTC 415
| |.| |||||.||.||.||.|||||||.|.|||| |.|.|.||| |..|
BPUM_1978___y 368 CTGCT-TTTTCGGCAGGGATACATAAATTTGAAGATTCATACAAG-CAGC 415
BSNT_03346___ 416 CGGCGCATAAAGTCAGCAAGGTTTACTATTATATGATAAATGGTTTTCAT 465
|.|||||||||||.||..||.|.||.|||||.|||||.||.|||...|||
BPUM_1978___y 416 CTGCGCATAAAGTAAGTCAGATGTATTATTACATGATTAACGGTCACCAT 465
BSNT_03346___ 466 CAGCCGGATTTTGTCATTGATATCTCGGATACAATAGAGGC----AAAGA 511
|..||.||||||||.||||||||.||.||...||| || |||||
BPUM_1978___y 466 CGTCCAGATTTTGTGATTGATATTTCTGAGGAAAT----GCATCAAAAGA 511
BSNT_03346___ 512 AACAAAGCCTCAACGCCTACAAAAGCCAGTTTATCCCGTCAAA-----GG 556
...|.|||.|..|.||.||..||||.||.||| ||.||| |.
BPUM_1978___y 512 TTGATAGCTTGCATGCGTATCAAAGTCAATTT-----GTGAAATCTGCGA 556
BSNT_03346___ 557 ATTCAGTTTCTACTCCTCTGACGAATGGTTATATCGAGATCGTTGAAGCG 606
||||||||...||.|||||...|||.||.|||||.||..|.||..||..|
BPUM_1978___y 557 ATTCAGTTGAGACACCTCTTGTGAACGGATATATTGATTTTGTCAAAATG 606
BSNT_03346___ 607 AGAGAAAAG-CTTTACGGTAAAGAAGCGGGCGT------GGAGTATGCCG 649
|||| || ||.| |||..|||| ||..|| .|..|||||.|
BPUM_1978___y 607 AGAG---AGTCTAT---GTATGGAAG-GGAAGTCAATAAAGCTTATGCAG 649
BSNT_03346___ 650 AAGGTTTCTTTTC-CAAACGGA---TGCTGATGCTTGATCATGATGTGCT 695
||||.| ||.|| |||| || ..||..||.|||||.|.||..|.||
BPUM_1978___y 650 AAGGGT--TTATCACAAA--GAAACCACTTTTGATTGATGACGACTTACT 695
BSNT_03346___ 696 TGGGGGCGAACAATGA 711
||||||..||
BPUM_1978___y 696 TGGGGGGTAA------ 705
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