Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03350 and BPUM_1982
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:51
# Commandline: needle
# -asequence dna-align/BSNT_03350.1.24716.seq
# -bsequence dna-align/BPUM_1982___ypjC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03350-BPUM_1982___ypjC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03350-BPUM_1982___ypjC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03350
# 2: BPUM_1982___ypjC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 894
# Identity: 651/894 (72.8%)
# Similarity: 651/894 (72.8%)
# Gaps: 42/894 ( 4.7%)
# Score: 2259.0
#
#
#=======================================
BSNT_03350 1 ATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGC 50
.||||...|||||||.|..|.||.||.||..|.|||||||||||.|||.|
BPUM_1982___y 1 TTGCTAAAAGAAATTCGTCTTAAGAATATCGTATTTATTTTAATAGGATC 50
BSNT_03350 51 GGCAATTTTTTCATTTGG-CTTGGTTCATTTCAATATGCAGAACAATCTG 99
.||.||||||||.||.|| ||| ||||||||.|||||||||||||||.||
BPUM_1982___y 51 TGCGATTTTTTCTTTCGGTCTT-GTTCATTTTAATATGCAGAACAATTTG 99
BSNT_03350 100 GCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTT---TATGCCCTTTT 146
||.||.|||||.|||||||||||||||| ||||| |||...||.||
BPUM_1982___y 100 GCGGAAGGCGGATTTACAGGTATTACAC---TGCTTTTATATTTTCTATT 146
BSNT_03350 147 CCACATCAGCCCCTCTATCTCGAACCTGGTATTGAACATCCCGATTTTTT 196
||||||...|||.||.||.||.|||||.||.||.|||||.|||||.||||
BPUM_1982___y 147 CCACATTGACCCATCCATTTCAAACCTTGTCTTAAACATTCCGATCTTTT 196
BSNT_03350 197 TTATTGGCTGGCGTTTGCTCGGCAGGACAATGTTTGTTTATACCCTTGTC 246
||||.||||||....||||||||||.||.||||||..||||||..||||.
BPUM_1982___y 197 TTATCGGCTGGAAAATGCTCGGCAGAACCATGTTTACTTATACAATTGTA 246
BSNT_03350 247 GGCACTGT-AGCCTTGTCTTTGTTCCTCAGCATCTTTCAGCGATATGAAA 295
|||||.|| ||.||| |||.|.||.|||..||||||.|||||.|.|.|||
BPUM_1982___y 247 GGCACCGTCAGTCTT-TCTGTCTTTCTCGCCATCTTCCAGCGCTTTCAAA 295
BSNT_03350 296 TCCATATGCCCCTTCAGCACGACTTAGCGCTCGCCGCTTTATTTGCCGGC 345
|.||||||||.|||||||||||.||.||.||.|||||..|.|||||.||.
BPUM_1982___y 296 TACATATGCCTCTTCAGCACGATTTGGCCCTTGCCGCGCTCTTTGCTGGT 345
BSNT_03350 346 GTATTCATCGGAGCCGGACTGGGTATTATTTTTAAGTTCGGCGGTACGAC 395
||.||.||||||.|.||.||.||.||.||.|||||||||||.|||||.||
BPUM_1982___y 346 GTGTTTATCGGAACAGGCCTTGGAATCATCTTTAAGTTCGGTGGTACTAC 395
BSNT_03350 396 AGGCGGTGTTGATATCATCGCACGTTTAGTGAATAAGTATTTTGGGATC- 444
.||.||||||||.|||||||||.|..|..|.||.|||.||| |||
BPUM_1982___y 396 CGGTGGTGTTGACATCATCGCAAGACTCATCAACAAGCATT-----ATCA 440
BSNT_03350 445 ----CCGATGGGCAGAACGATGTTTGCTTTCGATGCCTGCGTCATCATTT 490
.|.|||||..||||.|||||....|||||.||.||||||||.|...
BPUM_1982___y 441 AGTGGCTATGGGGCGAACAATGTTCATCTTCGACGCTTGCGTCATTACGA 490
BSNT_03350 491 TGTCTTTGCTTACTTATCTCTCCTATAAAGAAGCGATGTATACGCTGGTA 540
|.||| |||||||||.|....||.||||||||.|||||||||||.||.
BPUM_1982___y 491 TTTCT---CTTACTTATTTAAATTACAAAGAAGCCATGTATACGCTCGTC 537
BSNT_03350 541 GCTGTATTTGTAGCGGC-AAGATTAATCGATTTTATTCAGGAAGGCGGAT 589
||.||||||||.||.|| ||| .|.||.||.||.||.||.|||||||..|
BPUM_1982___y 538 GCAGTATTTGTTGCTGCGAAG-GTCATTGACTTCATGCAAGAAGGCGCTT 586
BSNT_03350 590 ACGCTGCTAAAGGCGCTACGATCATCTCCTCGAAAA--ACGACCTGATTC 637
||||.||.||||||||.|.||||||.|| .||||| |.|||.|.||||
BPUM_1982___y 587 ACGCAGCCAAAGGCGCCATGATCATATC--TGAAAAAGATGACATCATTC 634
BSNT_03350 638 AGAAAAAGATTCTTGAAGAAATGGAACGTGGCGTCACCATTTTGAAAGGA 687
|.||.||.|||...||.||||||||.||.||.||||||.||||.|||||.
BPUM_1982___y 635 AAAAGAAAATTACAGAGGAAATGGAGCGAGGTGTCACCGTTTTAAAAGGG 684
BSNT_03350 688 CAAGGTTCCTACACAAAAGAGGATATAG----ATGTACTTTATTGTGTGG 733
...|||||.||.||||||.||| || |.||.||||||||.||.|
BPUM_1982___y 685 GTTGGTTCTTATACAAAACAGG----AGCGCAACGTCCTTTATTGCGTCG 730
BSNT_03350 734 TGCCGAAAAACGAA-TTGGTGATGCTGAAAAGCGTGATTAACTCCATTGA 782
|.||||||||.||| |||...|| ||.||||||||..|.|.|||..|.||
BPUM_1982___y 731 TCCCGAAAAATGAACTTGTCCAT-CTCAAAAGCGTCGTGACCTCAGTCGA 779
BSNT_03350 783 TCCCCATGCCTTTGTAGCGGTAAGCGATGTTCACGATGTGCTCGGAGAAG 832
|||.|||||.||||||.|.||.||.||.||.||.|||||.||.||.||||
BPUM_1982___y 780 TCCTCATGCGTTTGTATCCGTCAGTGACGTCCATGATGTACTTGGGGAAG 829
BSNT_03350 833 GATTTACGCTTGATGAAAATAAAAATCCGCT---TCCGCGCTGA 873
|.||.||..|.||||||.|.|||||.||||| |||||..|.|
BPUM_1982___y 830 GCTTCACATTAGATGAACACAAAAAGCCGCTTAATCCGCATTAA 873
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