Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03352 and BPUM_1983

See Amino acid alignment / Visit BSNT_03352 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:51
# Commandline: needle
#    -asequence dna-align/BSNT_03352___ypjB.1.24716.seq
#    -bsequence dna-align/BPUM_1983___ypjB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03352___ypjB-BPUM_1983___ypjB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03352___ypjB-BPUM_1983___ypjB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03352___ypjB
# 2: BPUM_1983___ypjB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 912
# Identity:     526/912 (57.7%)
# Similarity:   526/912 (57.7%)
# Gaps:         225/912 (24.7%)
# Score: 1400.0
# 
#
#=======================================

BSNT_03352___      1 ATGAAACGAAAGC---TGACGATCTGTTTGTTGATTGCACTTATTTTT--     45
                     |||||||||||||   |..||||          |.|.|..||||||||  
BPUM_1983___y      1 ATGAAACGAAAGCCAATCGCGAT----------AATTCTATTATTTTTTC     40

BSNT_03352___     46 ---TATAATGGAAA-----TGCCAAGGCTGCAGAGCGGGGAAGC------     81
                        |||.|..|..|     ||||||.|       |||.||||.|      
BPUM_1983___y     41 TCGTATTACAGCCATCTGTTGCCAAAG-------GCGAGGAAACAGCAGC     83

BSNT_03352___     82 -------CTCGAGGAATTGAATGATTTATCCGATACAGTCTTTCAAATGA    124
                            ||..|.|||||.|..||..||||.|||.||.||||||||.|.|
BPUM_1983___y     84 TAGTGTGCTGCAAGAATTAACGGAACTATCAGATTCAATCTTTCAATTAA    133

BSNT_03352___    125 CCCGACAGGCAAAATATGAAGAGGCGCTTCAAGTC---TTGGAGTATTTT    171
                     |..||||.||.||||||||.||||||.|.||.|||   ||   ||||.||
BPUM_1983___y    134 CGAGACAAGCTAAATATGATGAGGCGTTACAGGTCGCATT---GTATGTT    180

BSNT_03352___    172 GAAAAAACATTAAAATCCGCTGAGAA---------AAAACAG-CAAGACC    211
                     |||||.|||||.|||   ||||||||         ||..|.| |||    
BPUM_1983___y    181 GAAAAGACATTTAAA---GCTGAGAATTGGCGCGGAACGCTGACAA----    223

BSNT_03352___    212 CCATGCTAACGGGATCCCAAATCCGTCAAATCACATTGGGCTATAATGAT    261
                       ||    |||      ||.||.||.|||||.|||.|.||||||.|.|||
BPUM_1983___y    224 --AT----ACG------CAGATTCGACAAATTACAGTTGGCTATCAAGAT    261

BSNT_03352___    262 AT--------GGTT--CGGAGTTTAAAGCAAGCTGATACATCAGACACAC    301
                     ||        ||.|  ||.||   .|||  |..|||   ||.||   |.|
BPUM_1983___y    262 ATCATAAAAGGGCTGCCGCAG---GAAG--AATTGA---ATGAG---CGC    300

BSNT_03352___    302 -AAAAACTCAGAGCAGCCGCGCAGTTCAGGATGCTGATGGATGCGGTTGA    350
                      ||||.||..|....|||.|.|||||.||.|||||..|.||||||.|  .
BPUM_1983___y    301 GAAAAGCTTCGTTATGCCTCACAGTTTAGAATGCTACTCGATGCGAT--C    348

BSNT_03352___    351 AAATCGG--TCTGACCCGCTTTGGGGCTCACTGGAAAAACCGATTATGGA    398
                     .|.||.|  |||||.||.||||||||.||.|||||.||.||..||||||.
BPUM_1983___y    349 CAGTCAGACTCTGAGCCACTTTGGGGTTCGCTGGAGAAGCCCGTTATGGG    398

BSNT_03352___    399 AGCTTTTACTGAACTGAAGCGAGATGTCCAAAAGAATGGAAGCA------    442
                     ..|||||.||..|.||||           |||||||..||||.|      
BPUM_1983___y    399 GTCTTTTCCTACATTGAA-----------AAAAGAAGTGAAGGATCCGGA    437

BSNT_03352___    443 --CAAGC----TTTCATGAAAAATGGAATGA---ATTTATCAGTTTATAT    483
                       ||| |    |||.||||||..||||||||   |.|| ||  ||||||.
BPUM_1983___y    438 GTCAA-CGACGTTTTATGAAACTTGGAATGAGCTAGTT-TC--TTTATAC    483

BSNT_03352___    484 GACTTGATTTACCCCAGTCTTACAATCGATGTATCAGAGGATCAGCTTGA    533
                     ||..||||.||.||.|||.|.||.||.|||||.||         ||.|||
BPUM_1983___y    484 GATATGATCTATCCGAGTTTAACCATTGATGTTTC---------GCCTGA    524

BSNT_03352___    534 AACAGTCGGAA----------AACATATAGACGTTATTGAGCAAGAGGAA    573
                     || ||..|.||          ||||.||.||.||.||||||||||..|||
BPUM_1983___y    525 AA-AGCTGCAAACGATTAAGCAACACATGGAAGTGATTGAGCAAGGTGAA    573

BSNT_03352___    574 TTT-------CAGCAAATGACAGAGAGCACGAAGCTTGAACGGCTTTCCC    616
                     |||       ||.|||.||       |.||.||||||||.||        
BPUM_1983___y    574 TTTTTAAAAGCATCAAGTG-------GGACAAAGCTTGAGCG--------    608

BSNT_03352___    617 TTCTTCAGCATGACCTGAAAAA-----------TGTGTTTG---ACAGGG    652
                       |.||| ||...|.||||.||           ||||||||   ||   |
BPUM_1983___y    609 --CCTCA-CAAAGCTTGAAGAAGATTTATCGAGTGTGTTTGCTCAC---G    652

BSNT_03352___    653 TGGAGGAGGATGATGCCGATCCGTC---TTTACTCTGGGTGATGATTACA    699
                     ||||..|.|||||.||.||.||.||   ||||   |||||.||..|.|||
BPUM_1983___y    653 TGGATCAAGATGAGGCTGACCCATCGCTTTTA---TGGGTCATTTTAACA    699

BSNT_03352___    700 ACCGGCAGTATCA--TCATTACTGCTCTT-ACCTATGTCGG-TTACAGAA    745
                     ||.||.||.||||  |.||||..|   || ||.|||||.|| ||.|.|||
BPUM_1983___y    700 ACAGGAAGCATCATTTTATTAACG---TTAACGTATGTAGGATTTCGGAA    746

BSNT_03352___    746 AGTACAAGGCGGAAAAAAACAAGCTGAA--AAAAAGG-------GACTAC    786
                     | |||...||.||.|||.|.||   |||  |||||.|       |||||.
BPUM_1983___y    747 A-TACCGTGCTGAGAAAGAGAA---GAAACAAAAACGACAAGCTGACTAT    792

BSNT_03352___    787 CCTAAATAA---    795
                     ||.||||.|   
BPUM_1983___y    793 CCGAAATCATAA    804


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