Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03353 and BPUM_1984
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:51
# Commandline: needle
# -asequence dna-align/BSNT_03353___ypjA.1.24716.seq
# -bsequence dna-align/BPUM_1984___ypjA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03353___ypjA-BPUM_1984___ypjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03353___ypjA-BPUM_1984___ypjA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03353___ypjA
# 2: BPUM_1984___ypjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 629
# Identity: 400/629 (63.6%)
# Similarity: 400/629 (63.6%)
# Gaps: 106/629 (16.9%)
# Score: 1333.5
#
#
#=======================================
BSNT_03353___ 1 GTGAAATGGTTTCAATATGTATTAGGGCAGCGGCCGATGCTTATTCTTGT 50
||.|||||
BPUM_1984___y 1 ------------------------------------------ATGCTTGT 8
BSNT_03353___ 51 -CTTAGCC-----ATTAATTTTCTGGGAACGGTTTACGGCTACTATTGGT 94
||.|.|| ||||||||.||.||.||.||.||||||||||||||||
BPUM_1984___y 9 GCTAATCCTGATAATTAATTTCCTTGGCACTGTGTACGGCTACTATTGGT 58
BSNT_03353___ 95 ACTTGCCGCAGCTTTTGGAGACACCGGCCCGTTTCCTGAT---TTTTGTT 141
|..|.||.||||||.|.||.||.||.|| |.||.|..| |||||||
BPUM_1984___y 59 ATATTCCACAGCTTGTTGAAACGCCAGC---TATCTTTTTAGCTTTTGTT 105
BSNT_03353___ 142 CCGGACAGTCCGACAGCAACGTTTTTCTTTCTGTTTGTGCTGCTTGCCTT 191
||.||||||||.||.||||..|||||||||.|.|||||.||.|||||.||
BPUM_1984___y 106 CCAGACAGTCCAACGGCAAGCTTTTTCTTTTTATTTGTTCTACTTGCGTT 155
BSNT_03353___ 192 TCTCATGAAACGGAATGCTCCGCTCTTTGAGGCGCTTGCGCTAGTAACCC 241
|.|.||||||||.||||||||....|||||.||.|||||.||.||.|||.
BPUM_1984___y 156 TTTGATGAAACGTAATGCTCCTTATTTTGAAGCACTTGCCCTCGTGACCT 205
BSNT_03353___ 242 TCGTAAAGTATGGCCTATGGGCGGTGGCTATGAATTTTCTTGTGCTTGCA 291
|..|.|||||.||..|||||||.||.|..||||||.|..||||.|||
BPUM_1984___y 206 TAATTAAGTACGGGTTATGGGCTGTAGGAATGAATATCTTTGTCCTT--- 252
BSNT_03353___ 292 GTAAC---TGGTGACTTGCCGTGGGAGGGCTACATGCTAATTGCTTCGCA 338
.||.| ||.|||.||.||||||||.||.||||||||.||||..||.||
BPUM_1984___y 253 TTATCTGTTGATGATTTTCCGTGGGAAGGATACATGCTGATTGGGTCCCA 302
BSNT_03353___ 339 TTTTGCAATGGCTGTTCAAGGCGTATTATACAGT-----CCGTATTTTCG 383
.|||||.|||||.|||||||.|||||| || |||||||.|||
BPUM_1984___y 303 CTTTGCGATGGCGGTTCAAGCCGTATT-----GTTTGCACCGTATTATCG 347
BSNT_03353___ 384 TTTT--------TCATTT--TGGCATCTTGCAATTGCTGCAGTCTGGACA 423
|||| |||||| |.|.|.||.||| |.||||..
BPUM_1984___y 348 TTTTAAAATGCGTCATTTGGTCGTAGCTGGCA----------TATGGATT 387
BSNT_03353___ 424 CTGCATAACGATGTCATTGACTACTTGTTTGATATGATGCCGCGGTATTC 473
.|.|||||||||||.|||||.||..|.||||.||||||||||||.|||||
BPUM_1984___y 388 TTACATAACGATGTGATTGATTATGTATTTGGTATGATGCCGCGTTATTC 437
BSNT_03353___ 474 AATGCTTTCTGATTATATGACTGAAATAGGATACGGAACATTTTGGCTAA 523
.|||||.||||..||||..|..||.||.||.||||..||.||||||.|||
BPUM_1984___y 438 TATGCTGTCTGCCTATACAAACGAGATCGGCTACGTCACGTTTTGGTTAA 487
BSNT_03353___ 524 GCA-------TCTTCTCAATCGCGCTTGCTTACTTTCTTGTGGTCTC-AA 565
||| |||||| ..||.|.||.|.|||.||..|.|| ||
BPUM_1984___y 488 GCATTGCCGTTCTTCT-------TGTTTCATATTATCTGGTCCTATCGAA 530
BSNT_03353___ 566 AAAAGCAAACGAAGCTTGAGCTGATGTAA 594
||||.|.|.| ||||||||.||....|||
BPUM_1984___y 531 AAAATCGATC-AAGCTTGAACTCCCTTAA 558
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