Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03360 and BPUM_1990
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence dna-align/BSNT_03360___ypiA.1.24716.seq
# -bsequence dna-align/BPUM_1990___ypiA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03360___ypiA-BPUM_1990___ypiA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03360___ypiA-BPUM_1990___ypiA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03360___ypiA
# 2: BPUM_1990___ypiA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1357
# Identity: 925/1357 (68.2%)
# Similarity: 925/1357 (68.2%)
# Gaps: 143/1357 (10.5%)
# Score: 3014.0
#
#
#=======================================
BSNT_03360___ 1 ---------------------------TTGAATACATTGATT-CAAGAAG 22
||||||| .||.||| |||||||
BPUM_1990___y 1 TTGGAAAACAGAAAGGAACGGTTTGATTTGAATA-GTTCATTACAAGAAG 49
BSNT_03360___ 23 CCATAAAATTAGTTGAAGCAGGTGAAACAGAAAAAGGCCT--CAACAC-- 68
||||||||||||||||.||.|||||.||.||||||||.|| .|||||
BPUM_1990___y 50 CCATAAAATTAGTTGAGGCGGGTGAGACTGAAAAAGGACTTCAAACACTT 99
BSNT_03360___ 69 GCTCTCGAAGGCTGAAAAACAGCTGCATGATGAAGATAAAGC-CATTGCA 117
|||| |||..|||||.||..|||||||||||||.||.|| || .|||
BPUM_1990___y 100 GCTC----AGGTAGAAAAGCATTTGCATGATGAAGAAAAGGCTCA-GGCA 144
BSNT_03360___ 118 GCCCAGCTTTATTACGAGTGGGGCGATGTAGAAAAAGC----AATTTCAC 163
||.|||.|.|||||.||.|||||.|||.|.||.||||| ||| |
BPUM_1990___y 145 GCTCAGTTATATTATGATTGGGGAGATATCGATAAAGCGAGAAAT----C 190
BSNT_03360___ 164 TGATTAGTGATCTACATGATTTATATCCAAATGAAACAG----AACTGAC 209
|.||.||||||.|||||||||||||||||.|.||||||| |||
BPUM_1990___y 191 TCATCAGTGATTTACATGATTTATATCCAGAGGAAACAGGGTTAAC---- 236
BSNT_03360___ 210 GAAT--TTCTACGCTGAACTTTTAATAGATATTGACGAAGAAGAAAAAGC 257
|| ||.||.||.||||||.|.||.||...|||.|||||||||||.||
BPUM_1990___y 237 --ATGCTTTTATGCAGAACTTCTGATTGACTCTGATGAAGAAGAAAAGGC 284
BSNT_03360___ 258 CCTCGCTGTGCTGGAGACTATTCCGGAAACAGATCCATCATATCCGGAAA 307
..|..|.||..|.|||||.|||||.|||...|||.|..|||||||.||.|
BPUM_1990___y 285 AATTTCGGTATTAGAGACAATTCCTGAAGATGATGCTGCATATCCAGAGA 334
BSNT_03360___ 308 GTTTGCTGCTTATGGCGGATCTTTATCAGATGCAGGGGTTATTCGAAGTC 357
|..|.|||.|.|||||.|||.|.|||||.|||||.|||.||||.||||||
BPUM_1990___y 335 GCCTACTGTTAATGGCAGATTTGTATCAAATGCAAGGGCTATTTGAAGTC 384
BSNT_03360___ 358 AGTGAACAAAAGCTTTTACAGGCAA---AGTCCATTCTGGACAATGAACC 404
|||||||||||.||.|||.|.|||| |||...|||.| ||||||.|
BPUM_1990___y 385 AGTGAACAAAAACTCTTAAAAGCAAAAGAGTTGCTTCCG---AATGAAGC 431
BSNT_03360___ 405 TGTTATTGATTTTGCACTGGGAGAACTTTACTTTGCTCAGGGAGCCTATG 454
..||||||||||||||.|.||.|||.|.||.|||.|.||.| |.|| |.
BPUM_1990___y 432 CATTATTGATTTTGCATTAGGTGAATTGTATTTTTCGCAAG--GTCT-TT 478
BSNT_03360___ 455 CA---AAAGCGGTTCAATATTT-TAAAACAACG--GCTGAGGAGCAGAGT 498
|| |||||||.|.|.||||| | ||||.| ||.||..|.||...|
BPUM_1990___y 479 CAAAGAAAGCGGCTGACTATTTCT---ACAAGGTCGCAGATCAACAACAT 525
BSNT_03360___ 499 GAGATCGGAGGCGTTAATGTCCATCAAAGACTGGCAGAATCGTTAAGTGC 548
||..|.||.|||||.|||||..||||.||.||.||.|||||..|.||..|
BPUM_1990___y 526 GAAGTTGGCGGCGTCAATGTTTATCAGAGGCTCGCTGAATCACTCAGCAC 575
BSNT_03360___ 549 CTCAGGTGAATTTGAGGATGCCATTCCATGGTATGAGAAAGCTGTCGATG 598
..|.||.||||||||.|||||..||..||||||.||.||.||.| ||
BPUM_1990___y 576 AGCTGGAGAATTTGAAGATGCGCTTGAATGGTACGAAAAGGCAG----TG 621
BSNT_03360___ 599 AGA----ATCCTGATCCTAATACGATTTTCGGCTATGGTTTTACAGCCTT 644
|.| |..|.||.||.|||||..||||.||.||.||.||||||||
BPUM_1990___y 622 AAAGGCCAAACAGACCCGAATACCCTTTTTGGTTACGGATTTACAGC--- 668
BSNT_03360___ 645 ACAGGCG-GGGCTTGT-----GAAAACAGCTATTAAGCAGCTGTCTGATT 688
|..| |||||.|| |||||||||.|||.|||||||.||.||..
BPUM_1990___y 669 ---GATGAGGGCTGGTCGAACGAAAACAGCCATTCAGCAGCTTTCCGAAC 715
BSNT_03360___ 689 TAAAGGAGCTTGATCCATCTTATACTTCACTTTATATGCCGCTCTCGAAA 738
||||.||..||||||||||||||.|.||.|||||||||||..|..|.|||
BPUM_1990___y 716 TAAAAGATATTGATCCATCTTATTCGTCCCTTTATATGCCTTTAGCAAAA 765
BSNT_03360___ 739 AGCTATGAAGCTGAAGGGGTGTATGAAGAGGCATTAAAAACGGCA---AA 785
||.|||||.|..|||||..|.|||.|.||.||.|||.| ||.| ||
BPUM_1990___y 766 AGTTATGAGGAAGAAGGACTATATCACGAAGCTTTAGA---GGTAGTCAA 812
BSNT_03360___ 786 AGAGGGGATCAGATATGATGAATATAACAAAGAACTTTTCCTT-TATGCC 834
||||||.||.|.|..||||||.|||||||||||| ||.|..|| ||||..
BPUM_1990___y 813 AGAGGGTATTAAAATTGATGAGTATAACAAAGAA-TTATATTTATATGGT 861
BSNT_03360___ 835 GCCAAAATGGCCTTGAAAATCGGGAAGTCAGAAGAGGGGAAAAAGCTGCT 884
||.||.||.|.||||||||..|||.|.||||||||.|.|||||||.||||
BPUM_1990___y 862 GCAAAGATTGACTTGAAAAATGGGGATTCAGAAGATGCGAAAAAGTTGCT 911
BSNT_03360___ 885 TCAGGAGGCGCTTGCGCTTGATCCGGGCTTTGTCGAGGCGCTTCATACAC 934
|||.||.||.|||||.|||||.|||||||.|.|.||.|||.||||.|||
BPUM_1990___y 912 TCAAGAAGCTCTTGCTCTTGACCCGGGCTATATTGAAGCGATTCAAACA- 960
BSNT_03360___ 935 TTCTTGC-CGTGTATC-AC---AAAGAAGAGGATTATGATCAGATCATTG 979
|||| ||.| ||| || ||.||||||..||.||||.|.||..|.|
BPUM_1990___y 961 ---TTGCTCGCG-ATCTACTTAAATGAAGAGCTTTTTGATGAAATTCTGG 1006
BSNT_03360___ 980 ATCTTATTCAAGAGGTTCGAAGCTACGGTGAAGAAGATCCTAAATACAAT 1029
||.|.|||.||||||||..|||||..||.|||||.|||||.||||..|||
BPUM_1990___y 1007 ATGTCATTAAAGAGGTTAAAAGCTTTGGGGAAGAGGATCCAAAATGGAAT 1056
BSNT_03360___ 1030 TGGTATCTTGCAAGCGCATATACTGAATTAGAGCAATACGAGGAAGCAAA 1079
||||||..||||...||||.|..||.|..||||.||||..|.||||||..
BPUM_1990___y 1057 TGGTATGCTGCATCTGCATCTGTTGGACGAGAGGAATATAAAGAAGCAGC 1106
BSNT_03360___ 1080 ACAATCCTT-----TGAGGCTGCCT-ATCTTCATTACCGGGAGGATAGAG 1123
|.|.|.||| ||...|||||| ||.||.|| |||||..|.|
BPUM_1990___y 1107 AGAGTACTTCAAGCTGGCTCTGCCTGATTTTGAT------GAGGAACGTG 1150
BSNT_03360___ 1124 ATTTCTTATATGAATACGCAAGCTTCCTATTAGAAGAAGGTCTTCAAAAA 1173
|.||.||||||||||||||.|..|||||.|||||||||||....||||||
BPUM_1990___y 1151 ACTTTTTATATGAATACGCGACGTTCCTTTTAGAAGAAGGCAGACAAAAA 1200
BSNT_03360___ 1174 GAAGCGCTGCCGCTTTT--GAAAAAGGTTCTT--GAAATGGACGGAGCCA 1219
|||||..||||.||.|| |.||| |||||| |||| ||.||..|.|
BPUM_1990___y 1201 GAAGCATTGCCTCTATTACGCAAA--GTTCTTCAGAAA--GATGGCACAA 1246
BSNT_03360___ 1220 ATGAAGAGCTTGAAGAAACGATTTTGCGAATCGAGGATGAATTTTC---- 1265
|||||||..|.||||||||||||||..||||.||.||.|||.||||
BPUM_1990___y 1247 ATGAAGAAATCGAAGAAACGATTTTAAGAATTGAAGACGAAATTTCCTTA 1296
BSNT_03360___ 1266 TAGATAA 1272
|||
BPUM_1990___y 1297 TAG---- 1299
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