Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03368 and BPUM_1996
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_03368___trpF.1.24716.seq
# -bsequence dna-align/BPUM_1996___trpF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03368___trpF-BPUM_1996___trpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03368___trpF-BPUM_1996___trpF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03368___trpF
# 2: BPUM_1996___trpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 755
# Identity: 416/755 (55.1%)
# Similarity: 416/755 (55.1%)
# Gaps: 202/755 (26.8%)
# Score: 1043.0
#
#
#=======================================
BSNT_03368___ 1 GTGAAGAAACCGGCATTAAAATATTGCGGTATTCGG--TCACTAAAGGAT 48
|.||||||....|||||||||||||| ..||| ||||||.|.|||
BPUM_1996___t 1 ---ATGAAACCTTTTTTAAAATATTGCGG--AGCGGGCTCACTAGAAGAT 45
BSNT_03368___ 49 -----TTGCAGCTTGCGGCGGAATCACAGGCTGATTACCTAGGATTTATT 93
.|||| || ||..||||.||.||.|||....|.|||||||||
BPUM_1996___t 46 GTAAAATGCA--TT---GCTCAATCTCAAGCAGATGCGATCGGATTTATT 90
BSNT_03368___ 94 TTTGCTGAAAGCAAACGAAAAGTATCTCCGGAAGATGTGAAAAAATGGCT 143
|||||...|||.|||.||.||||...|||..|..|.||||||.|||||||
BPUM_1996___t 91 TTTGCGCCAAGTAAAAGACAAGTCGATCCAAATCAAGTGAAACAATGGCT 140
BSNT_03368___ 144 GAACCAAGCTC---GTGTCGAAAAACAGGTTGCAGGTGTTTTTGATAATG 190
.|.|||| || |||.||.|||| ||.||.|.|||||.||.|..||||
BPUM_1996___t 141 -CAGCAAG-TCGCAGTGCCGTAAAA-AGATTACGGGTGTATTCGTAAATG 187
BSNT_03368___ 191 AA------TCAATAGAGACGATGTCACGT--------ATAGCCAAGAGCT 226
|| ..||.||.| |||.||.| |||..| ||
BPUM_1996___t 188 AAAACACCCAAAAAGTG----TGTGACATCACAAAACATATTC-----CT 228
BSNT_03368___ 227 TGAAGCTCGACGTCATTCAGCTTCACGGTGATGAAAAACCGGCGGATGCT 276
| |.||..||.|.|||||.||.||.|||||||.|...|.|||||
BPUM_1996___t 229 T-----TAGATATCGTGCAGCTACATGGAGATGAAACAAAAGAGGATG-- 271
BSNT_03368___ 277 GCTGCTCTTCG------------CAAGCTGACAGG--CTGTGAAATATGG 312
|| ||| |..||||| |.|| |.|.|||
BPUM_1996___t 272 ---------CGAAACAAATAAAACAA-CAAACAGGGACGGT--AGTGTGG 309
BSNT_03368___ 313 AAGGCGCTTCACCATCAAGATAACACAACTCAAGAAATAGCCCGCTTTAA 362
||.|...|| |||||.||| ||||.|.|||
BPUM_1996___t 310 AAAGTCTTT---CATCACGAT-------------------CCCGATATAA 337
BSNT_03368___ 363 A----------GATAA---------------------TGTTGACGGCTTT 381
| ||||| |||.||.||||||
BPUM_1996___t 338 AAGGAACACTTGATAAAATGACGGCATTTGCGCCATTTGTCGATGGCTTT 387
BSNT_03368___ 382 GTGATTGATTCATCTGTAAAAGGGTCTAGAGGCGGAACTGGTGTTGCATT 431
.|.||||||.|....|||||||||...||||||||..||||....||.||
BPUM_1996___t 388 CTCATTGATGCGAAAGTAAAAGGGATGAGAGGCGGTTCTGGCACAGCTTT 437
BSNT_03368___ 432 TTCTTGGGAATGTGTTCCGGAAT---ATCAGCAGG-----CGGCTATTG- 472
|.|.||||||...||.||...|| |.|||||.| |||| |||
BPUM_1996___t 438 TACATGGGAAGCGGTACCTTTATACAACCAGCATGCAAAACGGC--TTGA 485
BSNT_03368___ 473 GTAAACGCTGCTTTATCGCTGGCGGCGTGAAT----CCGG---------- 508
|.|||| .|||.|.||.||.|||| |||| ||||
BPUM_1996___t 486 GAAAAC-ATGCATCATTGCAGGCG----GAATTACACCGGAAACGCTGCC 530
BSNT_03368___ 509 ATAGCATCACCGGCCTATTGAAATGGCAGCCAGAAGGAATTGACCTTGCC 558
|.|||.| |..|||| ||||| |||.|||..||.||.|||.|.
BPUM_1996___t 531 AGAGCTT--CTTGCCT------ATGGC--CCAAAAGCGATCGATCTTTCA 570
BSNT_03368___ 559 AGCGGAATTGAAAAAAACGG--ACAAA---------AAGATCAGAATCTG 597
|||||.||.|||.||.|||| |.||| |||||||
BPUM_1996___t 571 AGCGGCATAGAAGAAGACGGGAAGAAAAGCAGCGCTAAGATCA------- 613
BSNT_03368___ 598 ATGAG-TCTTTTAGAAGAAAGGATG---AACCGATATGTATCCATATCCG 643
|.|.| || |||||||||||| ||| .|||||..|||||||.
BPUM_1996___t 614 AAGCGCTC-----GAAGAAAGGATGTTAAAC---AATGTACGCATATCCA 655
BSNT_03368___ 644 AATGA 648
|||||
BPUM_1996___t 656 AATGA 660
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