Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03374 and BPUM_2000

See Amino acid alignment / Visit BSNT_03374 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_03374___aroH.1.24716.seq
#    -bsequence dna-align/BPUM_2000___aroH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03374___aroH-BPUM_2000___aroH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03374___aroH-BPUM_2000___aroH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03374___aroH
# 2: BPUM_2000___aroH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 414
# Identity:     271/414 (65.5%)
# Similarity:   271/414 (65.5%)
# Gaps:          60/414 (14.5%)
# Score: 831.5
# 
#
#=======================================

BSNT_03374___      1 ATGATGATTCGCGGAATTCGCGGAGCAACTACAGT---TGAACGGGATAC     47
                     ||||||.|||||||.||.||.||.||.||.||.||   .|||   |||||
BPUM_2000___a      1 ATGATGTTTCGCGGGATACGTGGGGCTACAACTGTGACAGAA---GATAC     47

BSNT_03374___     48 TGAAGAAGAAATTTTACAAAAAACTAAACAGCTGTTAGA---GA------     88
                     .|||..||||.|.|||.|.|||||.|||||||||.||||   ||      
BPUM_2000___a     48 AGAAACAGAAGTGTTAAACAAAACGAAACAGCTGCTAGAAGCGATTATTT     97

BSNT_03374___     89 ----AAATCATAGAAGAAAATCATACAAAACCGGAAGATGTTGTTCAAAT    134
                         ||||    ||||.|.||         ||.|||..|||.||.||.||
BPUM_2000___a     98 CAAGAAAT----GAAGTAGAT---------CCAGAACGTGTCGTGCAGAT    134

BSNT_03374___    135 GCTTCTGTCGGCTACACCTGATTTGCACGCTGTTTTCCCGGCAAAAGCTG    184
                     ..|..|.||.|||||||..|||.|.|||.|.|||||.|||||||||||..
BPUM_2000___a    135 TTTAATTTCAGCTACACAAGATATTCACTCCGTTTTTCCGGCAAAAGCCC    184

BSNT_03374___    185 TTCGCGAGCTTTCAGGATGGCAGTATGTACCGGTAACATGTATGCAGGAA    234
                     ||||..||.||..|||.|||..||||||.||.||.||.|||||||||||.
BPUM_2000___a    185 TTCGTCAGTTTGAAGGGTGGACGTATGTGCCTGTTACTTGTATGCAGGAG    234

BSNT_03374___    235 ATGGACGTAACA-GGCGGTCTGAAAAAGTGCATAAGAGTCATGATGACCG    283
                     .|||||.| .|| ||||||||.||..|.||.||..|.||..|.|||||.|
BPUM_2000___a    235 CTGGACAT-TCATGGCGGTCTAAAGCATTGTATTCGTGTGTTAATGACGG    283

BSNT_03374___    284 TCCAGACAGATGTCCC---TCAGGATCAGAT---CAGACATGTATATTTA    327
                     ||||.|||||   |.|   .|||||  ||||   ||| |||||.||.||.
BPUM_2000___a    284 TCCAAACAGA---CACAAAGCAGGA--AGATGTGCAG-CATGTGTACTTG    327

BSNT_03374___    328 GAAAAAGCCGTCGTATTGA------GGCCCGATTTATCA-TTGACAAAAA    370
                     |||.||||.|      |||      |.||.|||||| || ||||||||||
BPUM_2000___a    328 GAAGAAGCTG------TGACGCTTCGCCCTGATTTA-CAGTTGACAAAAA    370

BSNT_03374___    371 ATACTGAATTGTAA    384
                     |.|..|||||.|||
BPUM_2000___a    371 ACAAGGAATTATAA    384


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