Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03376 and BPUM_2002

See Amino acid alignment / Visit BSNT_03376 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_03376___aroF.1.24716.seq
#    -bsequence dna-align/BPUM_2002___aroF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03376___aroF-BPUM_2002___aroF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03376___aroF-BPUM_2002___aroF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03376___aroF
# 2: BPUM_2002___aroF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1216
# Identity:     905/1216 (74.4%)
# Similarity:   905/1216 (74.4%)
# Gaps:          68/1216 ( 5.6%)
# Score: 3366.5
# 
#
#=======================================

BSNT_03376___      1 ATGAAGGGAGAAGAAGTCATGAGATATTTAACAGCCGGAGAATCACACGG     50
                                       ||||||||.||||||||.||.||||||||.||
BPUM_2002___a      1 ------------------ATGAGATACTTAACAGCAGGTGAATCACATGG     32

BSNT_03376___     51 CCCCCAACTGACAACCATTATTGAGGGTGTACCTGCCGGGCTTTACATAA    100
                     .||.|||.||||.||.||||||||.||.||.||.||.||.|||||||||.
BPUM_2002___a     33 TCCACAATTGACCACAATTATTGAAGGCGTTCCAGCGGGACTTTACATAG     82

BSNT_03376___    101 CGGAGGAAGATATCAATTTTGAGCTTGCCAGACGCCAAAAAGGACACGGC    150
                     .|.||||.||.||.||.|.|||..|.||.|||.|.||||||||.||||||
BPUM_2002___a     83 AGCAGGATGACATTAACTATGAATTGGCTAGAAGACAAAAAGGTCACGGC    132

BSNT_03376___    151 CGCGGCCGCCGCATGCAGATCGAAAAAGACCAGGCCAAA--ATTATGAGC    198
                     ||||||.|..|.||||||||.|||||||||||.||.|||  ||||  |||
BPUM_2002___a    133 CGCGGCAGAAGAATGCAGATAGAAAAAGACCAAGCGAAAGTATTA--AGC    180

BSNT_03376___    199 GGGGTGCGCCATGCACG----TACACTCGGTTCACCAATTGCTCTCGTAG    244
                     ||.||.|||    ||||    .|||.|.|||||.||.|||||.||.||.|
BPUM_2002___a    181 GGTGTTCGC----CACGGGAAAACATTAGGTTCTCCTATTGCACTTGTCG    226

BSNT_03376___    245 TTGAAAATAACGATTGGAAGCATTGGACAAAAATCATGGGCGCCGCCCCG    294
                     |||||||.|||||.||||||||||||||||||.|.|||||.||.|..|||
BPUM_2002___a    227 TTGAAAACAACGACTGGAAGCATTGGACAAAAGTGATGGGGGCAGAGCCG    276

BSNT_03376___    295 ATTACAGAAGATGAAGAAAAGGAAATGAAGCGCCAGATTTCCAGACCTAG    344
                     ||.||||||||.|||||||..|||||||||||.||.|||||..|.|||||
BPUM_2002___a    277 ATCACAGAAGAAGAAGAAAGTGAAATGAAGCGTCAAATTTCACGCCCTAG    326

BSNT_03376___    345 ACCTGGGCACGCTGACTTAAACGGTGCAATTAAATATAATCATCGTGATA    394
                     |||.||.||.||.||.|||||.|||||.|||||||||...||.|||||||
BPUM_2002___a    327 ACCAGGACATGCGGATTTAAATGGTGCGATTAAATATGGACACCGTGATA    376

BSNT_03376___    395 TGAGAAATGTGCTTGAGCGTTCTTCAGCAAGGGAAACAACTGTCAGAGTG    444
                     ||.||||.||..|.||||||||.|||||..|.||.||||||||..|.||.
BPUM_2002___a    377 TGCGAAACGTATTAGAGCGTTCATCAGCTCGTGAGACAACTGTTCGCGTA    426

BSNT_03376___    445 GCGGCAGGGGCTGTAGCTAAAAAGATTCTTTCTGAGC-----TTGGCATT    489
                     ||.|||||.||.||.||||||.|.|     |||.|||     |.||.||.
BPUM_2002___a    427 GCAGCAGGCGCAGTCGCTAAACAAA-----TCTTAGCTCATTTAGGAATC    471

BSNT_03376___    490 AAGGTGGCGGGCCACG-TGTTGCAAATTGGCGCTGTTAAAGCTGAAAAAA    538
                     ||.||.||.||||||| |.||| |||||||||..||.|||||.|...|.|
BPUM_2002___a    472 AAAGTAGCAGGCCACGTTCTTG-AAATTGGCGGAGTGAAAGCAGCTCATA    520

BSNT_03376___    539 CAGAATATACGTCAATTGAAGACCTGCAGCGCGTAACGGAAGAGTCTCCT    588
                     |.|.||||...|||||||||||..||||....||||||||||||||.|||
BPUM_2002___a    521 CGGCATATGAATCAATTGAAGATTTGCAAAAGGTAACGGAAGAGTCACCT    570

BSNT_03376___    589 GTCAGATGCTACGA---TGAAGAGGCAGGCAAAAAAATGATGGCTGCCAT    635
                     ||..|.||||||||   ||||   |||||..||||||||||||.||||||
BPUM_2002___a    571 GTTCGCTGCTACGACAGTGAA---GCAGGTCAAAAAATGATGGATGCCAT    617

BSNT_03376___    636 TGATGAAGCAAAGGCAAACGGAGATTCCATCGGCGGAATAGTAGAAGTCA    685
                     |||||||||.|||..|||.||.|||||.||.||.|||||.||.|||||.|
BPUM_2002___a    618 TGATGAAGCGAAGAAAAATGGTGATTCAATTGGTGGAATTGTGGAAGTTA    667

BSNT_03376___    686 TTGTCGAGGGAATGCCGGTAGGCGTGGGCAGCTATGTCCATTATGACCGC    735
                     |.||.||.||||||||.||.||.||.||.||||||||.||.|||||||||
BPUM_2002___a    668 TCGTTGAAGGAATGCCTGTTGGAGTCGGGAGCTATGTTCACTATGACCGC    717

BSNT_03376___    736 AAACTGGATAGCAAGCTTGCTGCCGCTGTACTGTCAATTAATGCATTTAA    785
                     |||.|.||||||||||||||.|..|||||.|||...||.||.||.|||||
BPUM_2002___a    718 AAATTAGATAGCAAGCTTGCAGGTGCTGTCCTGAGTATCAACGCTTTTAA    767

BSNT_03376___    786 AGGTGTGGAATTCGGGATCGGATTTGAGGCGGC-----AGGCCGAAATGG    830
                     |||.||.||||||||.|||||.|||||||||||     |     ||||||
BPUM_2002___a    768 AGGGGTTGAATTCGGTATCGGCTTTGAGGCGGCTTCTAA-----AAATGG    812

BSNT_03376___    831 AAGCGAAGTCCATGACGAGATCATTTGGGACGAGGAAAAAGGATACACCC    880
                     .||.||.||||||||.||.|||||.|||||.||.|||||.||.||.||  
BPUM_2002___a    813 CAGTGAGGTCCATGATGAAATCATCTGGGATGAAGAAAAGGGCTATAC--    860

BSNT_03376___    881 GTGCTACTAACAGA---CTT-GGCGGACTGGAAGGCGGCATGACGACAGG    926
                       |..|..||||.|   ||| ||.||.||.||||||||.|||.|.||.||
BPUM_2002___a    861 --GAGAAAAACAAATCGCTTAGGTGGTCTTGAAGGCGGAATGTCAACTGG    908

BSNT_03376___    927 GATGCCAATCGTTGTCCGCGGAGTCATGAAGCCGATTCCGACTTTGTATA    976
                     .||||||||.||.||..|.||.||||||||.||.||.||.||..|.||.|
BPUM_2002___a    909 TATGCCAATTGTCGTAAGAGGGGTCATGAAACCAATCCCAACGCTTTACA    958

BSNT_03376___    977 AACCTCTGAAAAGTGTCGATATTGAAACGAAAGAACCGTTTTCCGCCAGC   1026
                     ||||.||..||||.||.||.||||||||.||||||||.||.|||||.||.
BPUM_2002___a    959 AACCGCTTCAAAGCGTTGACATTGAAACAAAAGAACCTTTCTCCGCAAGT   1008

BSNT_03376___   1027 ATTGAACGTTCAGACAGCTGTGCTGTTCCTGCGGCAAGTGTAGTCGCTGA   1076
                     |||||||||||.||||||||||||||||||||.||||||||.|||||.||
BPUM_2002___a   1009 ATTGAACGTTCTGACAGCTGTGCTGTTCCTGCCGCAAGTGTTGTCGCAGA   1058

BSNT_03376___   1077 AGCGGCTGTCGCTTGGGAAATTGCGAACGCAGTCGTTGAACAATTCGGAT   1126
                     |||.|..||.|||||||||||.||.||.||.||.||.||.||.||.||..
BPUM_2002___a   1059 AGCAGTCGTGGCTTGGGAAATCGCCAATGCTGTAGTGGAGCAGTTTGGCC   1108

BSNT_03376___   1127 TAGATCAAATTGACCGCATTAGAGAAAATGTGGAGAATATGAGAAAACTG   1176
                     |.|||||||||||||||||||.|||||||||.||.||.|||.|..|.|| 
BPUM_2002___a   1109 TTGATCAAATTGACCGCATTAAAGAAAATGTTGAAAAAATGCGCCAGCT-   1157

BSNT_03376___   1177 TC-GAGGGAATTTTAA   1191
                     || |||||||||||||
BPUM_2002___a   1158 TCAGAGGGAATTTTAA   1173


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