Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03381 and BPUM_2005
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:54
# Commandline: needle
# -asequence dna-align/BSNT_03381___hepT.1.24716.seq
# -bsequence dna-align/BPUM_2005___hepT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03381___hepT-BPUM_2005___hepT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03381___hepT-BPUM_2005___hepT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03381___hepT
# 2: BPUM_2005___hepT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 980
# Identity: 735/980 (75.0%)
# Similarity: 735/980 (75.0%)
# Gaps: 34/980 ( 3.5%)
# Score: 2643.0
#
#
#=======================================
BSNT_03381___ 1 ATGAAATTTAA---AATGGCCTA-CTCTTTTTTAAATGACGATATTGATG 46
||||||.|.|| |||| | |||||||||||||.|.|||||.|||.
BPUM_2005___h 1 ATGAAACTAAAAGCAATG----ATCTCTTTTTTAAATCATGATATCGATA 46
BSNT_03381___ 47 TAATCGAAAGAGAACTTGAACAAACCGTACGTTCCGATTACCCGCTTTTA 96
|.|||||||.|||.|||||||||||.||.||.||.|||||..|..|.|||
BPUM_2005___h 47 TTATCGAAAAAGAGCTTGAACAAACAGTTCGCTCTGATTATGCATTATTA 96
BSNT_03381___ 97 AGCGAGGCAGGTCTTCACCTGCTGCAGGCCGGAGGGAAACGTATTCGTCC 146
||.||.|||||||||||..|||||||.||.||.||.|||||.||.||.||
BPUM_2005___h 97 AGTGAAGCAGGTCTTCATTTGCTGCAAGCGGGCGGAAAACGAATCCGCCC 146
BSNT_03381___ 147 TGTTTTCGTGCTGCTTTCTGGCATGTTTGGCGATTACGATATTAATAAGA 196
.|||||.||.||.|||||.||||||||||||||.|||||.||||||||.|
BPUM_2005___h 147 CGTTTTTGTTCTCCTTTCAGGCATGTTTGGCGACTACGACATTAATAAAA 196
BSNT_03381___ 197 TTAAATATGTCGCCGTCACTCTGGAAATGATTCACATGGCATCTTTGGTT 246
||||||||||.|||||..|.||.||..|.|||||.||||||||..|.|||
BPUM_2005___h 197 TTAAATATGTTGCCGTTGCGCTTGAGCTCATTCATATGGCATCGCTCGTT 246
BSNT_03381___ 247 CATGATGATGTCATTGATGATGCAGAGCTTCGCCGAGGAAAACCGACAAT 296
||.||||||||||||||||||||||||||..|..||||.||.||.||.||
BPUM_2005___h 247 CACGATGATGTCATTGATGATGCAGAGCTGAGAAGAGGCAAGCCAACGAT 296
BSNT_03381___ 297 CAAAGCAAAGTGGGACAATCGTATTGCGATGTACACAGGCGATTATATGC 346
.||.|||||.|||||||||||.|||||.|||||||||||.|||||||||.
BPUM_2005___h 297 TAAGGCAAAATGGGACAATCGAATTGCCATGTACACAGGAGATTATATGT 346
BSNT_03381___ 347 TTGCGGGATCTCTTGA-AATGATGACGAGAATTAACGAACCGAAAGCCCA 395
||||..||||.||||| .|| |||||.|..||.||..|.||||..||.||
BPUM_2005___h 347 TTGCAAGATCGCTTGAGTAT-ATGACAAAGATCAATCATCCGATGGCACA 395
BSNT_03381___ 396 TAGGATTTTGTCACAGACGATCGTTGAAGTTTGTCTAGGGGAAATTGAGC 445
|...|||||||||.|||.|.||||.||..|.|||||.||.|||||.||||
BPUM_2005___h 396 TGAAATTTTGTCAAAGATGGTCGTCGAGCTCTGTCTTGGTGAAATCGAGC 445
BSNT_03381___ 446 AGATCAAAGACAAATATAACATGGAACAAAATCTCAGAACGTATCTCCGC 495
|..|.|||||||||||.||.|||||.|||||.||..|.||.|||.|..|.
BPUM_2005___h 446 AAGTGAAAGACAAATACAATATGGATCAAAACCTGCGTACATATTTAAGA 495
BSNT_03381___ 496 CGTATCAAAAGAAAAACAGCTCTCTTGATCGC-GGTCAGCTGCCAGCTTG 544
.|.||||||.||||||||||..|..|.||.|| ||| |||||.|||.|.|
BPUM_2005___h 496 AGAATCAAACGAAAAACAGCCTTACTCATTGCAGGT-AGCTGTCAGTTAG 544
BSNT_03381___ 545 GTGCCATTGCGTCTGGAGCTGATGAGAAGATTCATAAGGCATTGTACTGG 594
||||.||.||..|.||..|.||||||||.|..|||||.||..|.||||||
BPUM_2005___h 545 GTGCAATAGCAGCAGGTACAGATGAGAAAACACATAAAGCCCTTTACTGG 594
BSNT_03381___ 595 TTTGGGTATTACGTCGGCATGTCTTATCAGATTATTGATGATATTCTTGA 644
|||||.||.||.|||||.|||||.||||||||.|||||||||.|.|||||
BPUM_2005___h 595 TTTGGCTACTATGTCGGGATGTCCTATCAGATCATTGATGATGTGCTTGA 644
BSNT_03381___ 645 TTTTACTTCAACTGAAGAAGAGCTGGGTAAACCCGTTGGAGGAGA--TTT 692
|||.||.|||||||||||||||||.|||||.||.||||||||.|| |||
BPUM_2005___h 645 TTTCACATCAACTGAAGAAGAGCTTGGTAAGCCTGTTGGAGGGGACCTTT 694
BSNT_03381___ 693 GCTTCAAGGAAACGTCACATTGCCAGTGCTGTATGCCCTGAAAAATCCTG 742
|.||||||||.||||||.|.|||||..|.|||||.|||||.||||||.
BPUM_2005___h 695 --TACAAGGAAATGTCACACTCCCAGTCTTATATGCACTGAAGAATCCTA 742
BSNT_03381___ 743 CATTAAAAAACCAGCTTAAA-TTGATTAACAGTGAGACAACGCAGGA--G 789
||.|..||..||| .||||| .|||||||.|||||.|||| |||.| |
BPUM_2005___h 743 CACTCGAAGGCCA-ATTAAAGCTGATTAATAGTGAAACAA--CAGAAATG 789
BSNT_03381___ 790 CAGCTTGAACCAATCATTGAAGAAATCAAAAAAACAGATGCAATTGA-AG 838
|||||..|.||..|.||||||.|..|||||.||||||||||.||.|| .|
BPUM_2005___h 790 CAGCTAAAGCCTGTGATTGAACATCTCAAACAAACAGATGCGATCGATCG 839
BSNT_03381___ 839 CATCTATGGCAGTAAGCGAAATGTATCTGCAGAAAGCTTT---TCAG--A 883
| ||.||...|||.||.|||||||||.||.|.||.||.|| .||| |
BPUM_2005___h 840 C-TCGATTCGAGTGAGTGAAATGTATTTGAAAAAGGCATTCGAACAGCTA 888
BSNT_03381___ 884 AATTAAACACGCTTCCACGAGGGCGCGCACGCTCGTCTCTTGCAGCCATC 933
.||.|| |||||.||||||||.|||.|..|.||.||.||..||||.
BPUM_2005___h 889 GATAAA-----CTTCCTCGAGGGCGAGCAAGAACATCACTCGCTTCCATT 933
BSNT_03381___ 934 GCAAAATATATCGGTAAAAGAAAATTTTAA 963
||.||||||||.||.|||.|||||||.|||
BPUM_2005___h 934 GCCAAATATATTGGAAAACGAAAATTCTAA 963
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