Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03390 and BPUM_2011
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:54
# Commandline: needle
# -asequence dna-align/BSNT_03390___spoIVA.1.24716.seq
# -bsequence dna-align/BPUM_2011___spoIVA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03390___spoIVA-BPUM_2011___spoIVA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03390___spoIVA-BPUM_2011___spoIVA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03390___spoIVA
# 2: BPUM_2011___spoIVA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1482
# Identity: 1195/1482 (80.6%)
# Similarity: 1195/1482 (80.6%)
# Gaps: 6/1482 ( 0.4%)
# Score: 4810.0
#
#
#=======================================
BSNT_03390___ 1 TTGGAAAAGGTCGATATTTTCAAGGATATCGCTGAACGAACAGGAGGCGA 50
||||||||.|||||||||||||||||||||||||||||||||||||||||
BPUM_2011___s 1 TTGGAAAAAGTCGATATTTTCAAGGATATCGCTGAACGAACAGGAGGCGA 50
BSNT_03390___ 51 TATATACTTAGGAGTCGTAGGTGCTGTCCGTACAGGAAAATCCACGTTCA 100
||||||.|||||||||||.||.|||||.||||||||.|||||.|||||.|
BPUM_2011___s 51 TATATATTTAGGAGTCGTTGGCGCTGTTCGTACAGGGAAATCTACGTTTA 100
BSNT_03390___ 101 TTAAAAAATTTATGGAGCTTGTGGTGCTCCCGAATATCAGTAACGAAGCA 150
|||||||.|||||||||||.|||||||||||||||||||.|||.||.|||
BPUM_2011___s 101 TTAAAAAGTTTATGGAGCTCGTGGTGCTCCCGAATATCAATAATGAGGCA 150
BSNT_03390___ 151 GACCGGGCCCGAGCGCAGGATGAACTGCCGCAGAGCGCAGCCGGCAAAAC 200
||.||.||..||||.|||||||||.|||||||.||||||||.||.|||||
BPUM_2011___s 151 GATCGTGCAAGAGCACAGGATGAATTGCCGCAAAGCGCAGCAGGAAAAAC 200
BSNT_03390___ 201 CATTATGACTACAGAGCCTAAATTTGTTCCGAATCAGGCGATGTCTGTTC 250
|||||||||.||.|||||.||||||||.||||||||.|||...||..|||
BPUM_2011___s 201 CATTATGACCACTGAGCCAAAATTTGTACCGAATCAAGCGGCATCAATTC 250
BSNT_03390___ 251 ATGT--GTCAGACGGACTCGATGTGAATATAAGATTAGTAGATTGTGTAG 298
|||| || |||||.||.|||||.||.||.||..|.||.||||||||||
BPUM_2011___s 251 ATGTAAGT--GACGGTCTTGATGTCAACATCAGGCTTGTCGATTGTGTAG 298
BSNT_03390___ 299 GTTACACAGTCCCCGGGGCTAAAGGATATGAAGATGAAAACGGGCCGCGG 348
|.|||||.|||||.||.||....||.||||||||||||||.||.||..|.
BPUM_2011___s 299 GATACACTGTCCCAGGTGCGCGCGGGTATGAAGATGAAAATGGTCCAAGA 348
BSNT_03390___ 349 ATGATCAATACGCCTTGGTACGAAGAACCGATCCCATTTCATGAGGCTGC 398
|||||.||.|||||.|||||.|||||.||.||||||||.|||||.||.||
BPUM_2011___s 349 ATGATTAACACGCCGTGGTATGAAGAGCCAATCCCATTCCATGAAGCGGC 398
BSNT_03390___ 399 TGAAATCGGCACTCGAAAAGTCATTCAAGAACACTCGACCATCGGAGTTG 448
.|||||.|||||.||.||.|||||||||||.||.||.||||||||.||||
BPUM_2011___s 399 GGAAATTGGCACACGCAAGGTCATTCAAGAGCATTCAACCATCGGTGTTG 448
BSNT_03390___ 449 TCATTACGACAGACGGCACCATTGGAGATATCGCCA-GAAGTGACTATAT 497
|.|||||.||.||.||..||||||||||.||| ||| ||..|||.|||||
BPUM_2011___s 449 TGATTACAACGGATGGTTCCATTGGAGAAATC-CCACGACATGATTATAT 497
BSNT_03390___ 498 AGAGGCTGAAGAAAGAGTCATTGAAGAGCTGAAAGAGGTTGGCAAACCTT 547
.||..||||||||.|.||.|||||.||.||.|||||||||||.||.||.|
BPUM_2011___s 498 TGAATCTGAAGAACGTGTGATTGATGAACTCAAAGAGGTTGGAAAGCCGT 547
BSNT_03390___ 548 TTATTATGGTCATCAACTCAGTCAGGCCGTATCACCCGGAAACGGAAGCC 597
||||||||||.||||||||.||.||.||.||||||||.|||||.|||||.
BPUM_2011___s 548 TTATTATGGTGATCAACTCTGTGAGACCCTATCACCCTGAAACAGAAGCG 597
BSNT_03390___ 598 ATGCGCCAGGATTTAAGCGAAAAATATGATATCCCGGTATTGGCAATGAG 647
.||||.|||||..|.|||.|||||||||||||.||.|||.|.||.|||||
BPUM_2011___s 598 CTGCGGCAGGAACTGAGCCAAAAATATGATATTCCAGTACTCGCCATGAG 647
BSNT_03390___ 648 TGTAGAGAGCATGCGGGAATCAGATGTGCTGAATGTGCTCAGAGAGGCCC 697
||||||.||.|||.|.||...||||||.||.|.||||||..|.||.||..
BPUM_2011___s 648 TGTAGAAAGTATGAGAGAGCAAGATGTCCTCAGTGTGCTTCGTGAAGCAT 697
BSNT_03390___ 698 TCTACGAGTTTCCGGTGCTAGAAGTGAATGTCAATCTCCCAAGCTGGGTA 747
|.||.||.||.||.||.|||||.||||||||.||.||.|||||||||||.
BPUM_2011___s 698 TATATGAATTCCCAGTCCTAGAGGTGAATGTGAACCTTCCAAGCTGGGTC 747
BSNT_03390___ 748 ATGGTGCTGAAAGAAAACCATTGGCTGCGTGAAAGCTATCAGGAGTCCGT 797
|||||||||||||||.|.|||||||||.|.||||||||||||||.||.||
BPUM_2011___s 748 ATGGTGCTGAAAGAAGATCATTGGCTGAGAGAAAGCTATCAGGACTCAGT 797
BSNT_03390___ 798 AAAGGAAACGGTTAAGGATATTAAACGGCTCCGGGACGTAGACAGGGTTG 847
.||.|||||.||.||||||||||||.|..|..|.||.||.|||.|.||||
BPUM_2011___s 798 GAAAGAAACCGTAAAGGATATTAAAAGATTAAGAGATGTTGACCGTGTTG 847
BSNT_03390___ 848 TCGGCCAATTCAGCGAGTTTGAATTCATTGAAAGTGCCGGATTAGCCGGA 897
|.||.||||||||.||.|||||.||.||||||||.||.||.|||||.||.
BPUM_2011___s 848 TTGGTCAATTCAGTGAATTTGACTTTATTGAAAGAGCGGGCTTAGCAGGG 897
BSNT_03390___ 898 ATTGAGCTGGGCCAAGGAGTGGCAGAAATTGATTTGTACGCGCCGGATCA 947
|||||..||||.|||||..|.||.||.||||||.|||||||.||.|||.|
BPUM_2011___s 898 ATTGAAATGGGTCAAGGGATTGCCGAGATTGATCTGTACGCCCCAGATGA 947
BSNT_03390___ 948 TCTATATGATCAAATCTTAAAAGAAGTTGTGGGCGTCGAAATCAGAGGAA 997
|||||||||.||.||..||||||||||.||.||.||.|||||.|||||.|
BPUM_2011___s 948 TCTATATGACCATATTCTAAAAGAAGTGGTTGGTGTAGAAATTAGAGGGA 997
BSNT_03390___ 998 GAGACCATCTGCTTGAGCTCATGCAAGACTTCGCCCATGCGAAAACAGAA 1047
.|||||||||.||.||||||||||||||.||.||.||||||||.||||||
BPUM_2011___s 998 AAGACCATCTTCTAGAGCTCATGCAAGATTTTGCGCATGCGAAGACAGAA 1047
BSNT_03390___ 1048 TATGATCAAGTGTCTGATGCCTTAAAAATGGTCAAACAGACGGGATACGG 1097
|||||||||||.||.|||||||||||||||||.||.||||||||||||||
BPUM_2011___s 1048 TATGATCAAGTATCAGATGCCTTAAAAATGGTGAAGCAGACGGGATACGG 1097
BSNT_03390___ 1098 TATTGCAGCGCCTGCTTTAGCTGATATGAGTCTCGATGAGCCGGAAATTA 1147
.|||||.||.||.|||||..|||||||||||.|.||||||||.|||||.|
BPUM_2011___s 1098 AATTGCGGCTCCGGCTTTGTCTGATATGAGTTTAGATGAGCCAGAAATCA 1147
BSNT_03390___ 1148 TAAGGCAGGGCTCGCGATTCGGTGTGAGGCTGAAAGCTGTCGCTCCGTCG 1197
||||.|||||.|||.|||||||.||..|.||.||.||.||.||.||.||.
BPUM_2011___s 1148 TAAGACAGGGTTCGAGATTCGGCGTACGACTAAAGGCGGTTGCACCATCT 1197
BSNT_03390___ 1198 ATCCATATGATCAAAGTCGATGTCGAAAGCGAATTCGCCCCGATTATCGG 1247
||.||||||||.||.||.|||||.||.||.|||||.||.|||||||||||
BPUM_2011___s 1198 ATTCATATGATTAAGGTAGATGTAGAGAGTGAATTTGCACCGATTATCGG 1247
BSNT_03390___ 1248 AACGGAAAAACAAAGTGAAGAGCTTGTACGCTATTTAATGCAGGACTTTG 1297
|||.||.|||||||||||||||||.||.|||||.||||||||.|||||||
BPUM_2011___s 1248 AACTGAGAAACAAAGTGAAGAGCTCGTCCGCTACTTAATGCAAGACTTTG 1297
BSNT_03390___ 1298 AGGATGATCCGCTCTCCATCTGGAATTCCGATATCTTCGGAAGGTCGCTG 1347
|.|||||||||||.||.||.||||||||.|||||.||.||..|.||.||.
BPUM_2011___s 1298 AAGATGATCCGCTTTCGATATGGAATTCTGATATATTTGGGCGCTCACTC 1347
BSNT_03390___ 1348 AGCTCAATTGTGAGAGAAGGGATTCAGGCAAAGCTGTCATTAATGCCTGA 1397
|||||..||||.||||||||.|||||.||||||||||||.|.|||||.||
BPUM_2011___s 1348 AGCTCCCTTGTCAGAGAAGGCATTCAAGCAAAGCTGTCACTGATGCCAGA 1397
BSNT_03390___ 1398 AAACGCACGGTATAAATTAAAAGAAACATTAGAAAGAATCATAAACGAAG 1447
|||.|||.|.||||||.|.|||||||||.|.|||||||||||.|||||||
BPUM_2011___s 1398 AAATGCAAGATATAAACTGAAAGAAACACTTGAAAGAATCATCAACGAAG 1447
BSNT_03390___ 1448 GCTCTGGCGGCTTAATCGCCATCATCCTGTAA 1479
|.||.|||||.||.|||||.||.||.||.||.
BPUM_2011___s 1448 GATCAGGCGGTTTGATCGCGATTATTCTATAG 1479
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