Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03394 and BPUM_2014

See Amino acid alignment / Visit BSNT_03394 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:55
# Commandline: needle
#    -asequence dna-align/BSNT_03394___gpsA.1.24716.seq
#    -bsequence dna-align/BPUM_2014___gpsA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03394___gpsA-BPUM_2014___gpsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03394___gpsA-BPUM_2014___gpsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03394___gpsA
# 2: BPUM_2014___gpsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1058
# Identity:     754/1058 (71.3%)
# Similarity:   754/1058 (71.3%)
# Gaps:          40/1058 ( 3.8%)
# Score: 2523.0
# 
#
#=======================================

BSNT_03394___      1 ATGAAAAAAGTCACAATGCTTGGAGCAGGGAGTTGGGGAACAGCACTGGC     50
                     |||||.|||.|.|||.|.|||||||||||.||.|||||||||||.||.||
BPUM_2014___g      1 ATGAAGAAAATTACAGTACTTGGAGCAGGAAGCTGGGGAACAGCGCTTGC     50

BSNT_03394___     51 TTTAGTTCTAACTGATAATGGAAATGAAGTGTGT----GTGTGGGCTCAC     96
                     |.|.||..||.||||||||....||||    |||    .||||||..||.
BPUM_2014___g     51 TCTTGTATTAGCTGATAATCATCATGA----TGTACACATGTGGGGACAT     96

BSNT_03394___     97 CGTGCAGATTTAATTCATCAAATTAATGAGTTGCATGAAAACAAAGATTA    146
                     .|...|||..|.|||.|.|||||..|||||...||||||||..|.|||||
BPUM_2014___g     97 AGACAAGAGCTCATTGACCAAATCGATGAGAAACATGAAAATCATGATTA    146

BSNT_03394___    147 TTTGCCGAATGTTAAGCTGTCTACATCCATTAAAGGAACAACAGATATGA    196
                     .|||||.|||||....|||.|..|.||.||.||.|..||.|||||.||||
BPUM_2014___g    147 CTTGCCAAATGTCGCACTGCCAGCGTCTATCAAGGCGACGACAGACATGA    196

BSNT_03394___    197 AAGAGGCTGTTTCAGACG---CAGATGTCATTATCGTTGCGGTCCCGACA    243
                     |..|||| |||  |||.|   ||||.|..|||||.||.||.||.||.|||
BPUM_2014___g    197 AGCAGGC-GTT--AGAGGGGACAGACGCTATTATTGTCGCTGTACCTACA    243

BSNT_03394___    244 AAAGCAATTCGGGAAGTGCTGAGACAGGC---TGTCCCTTTTATAACG--    288
                     ||.||.|||||.||||||.|||..|.|||   ||..|   |.||.|||  
BPUM_2014___g    244 AAGGCCATTCGTGAAGTGTTGAAGCGGGCAAATGAGC---TGATCACGTC    290

BSNT_03394___    289 AAAAAGGCAGTCTTTGTTCATGTCAGCAAGGGTATTGAGCCAGATTCACT    338
                     ||||..||.|  |||||||||||.||.||.||.|||||.||||||.||||
BPUM_2014___g    291 AAAAGTGCCG--TTTGTTCATGTAAGTAAAGGGATTGAACCAGATACACT    338

BSNT_03394___    339 TCTGCGCATTTCTGAAATTATGGAAATTGAGCTCCCGAGTGATGTCAGAA    388
                     ||||.|.||.|||.||||.||.|||...||..||||   .||.|  ||||
BPUM_2014___g    339 TCTGAGAATATCTCAAATGATTGAACAAGAAGTCCC---AGACG--AGAA    383

BSNT_03394___    389 AAGA-----TATCGTTGTCCTTTCCGGCCCGAGTCATGCGGAAGAAGTAG    433
                     ||||     |.||||||||.|.||.||.|||||.||.||.||.|||||||
BPUM_2014___g    384 AAGAGAAGCTGTCGTTGTCTTATCAGGACCGAGCCACGCTGAGGAAGTAG    433

BSNT_03394___    434 GGTTGCGGCACCCCACAACTGTTACTGCATCTTCA-AAGAGCATGAGGGC    482
                     |.|||||.||.||.||||||||.||||..||.||| ||.|...||| .||
BPUM_2014___g    434 GCTTGCGTCATCCGACAACTGTCACTGTTTCATCAGAAAATATTGA-AGC    482

BSNT_03394___    483 AGCAGAAGAGGTGCAGGATCTATTTATTAATCACAATTTTCGGGTGTACA    532
                     |||..||...||.||.|||.|.||.||.||..||||.|||.|.||.||.|
BPUM_2014___g    483 AGCTCAATTTGTTCAAGATTTGTTCATGAACAACAACTTTAGAGTCTATA    532

BSNT_03394___    533 CAAATCCTGACATTATCGGAGTTGAAATCGGAGGGGCTTTAAAAAATATT    582
                     ||||.|||||..|.||.||.||.|||||.||.||.||..|.||||||||.
BPUM_2014___g    533 CAAACCCTGATGTGATTGGTGTAGAAATTGGCGGCGCACTGAAAAATATC    582

BSNT_03394___    583 ATTGCCCTTGCTGCAGGAATTACAGATGGTTTAGGGTACGGCGACAATGC    632
                     |||||.|||||.||||||||.|||||.||..|.||.||.||.||||||||
BPUM_2014___g    583 ATTGCTCTTGCGGCAGGAATCACAGACGGGCTTGGATATGGTGACAATGC    632

BSNT_03394___    633 CAAAGCTGCTTTGATTACACGCGGACTTGCCGAAATCGCGAGACTCGGAA    682
                     .|||||.||..|.||.||..|.|||||.||.||||||||..|.|||||.|
BPUM_2014___g    633 GAAAGCGGCGCTCATCACTAGAGGACTCGCTGAAATCGCACGTCTCGGTA    682

BSNT_03394___    683 CGAAAATGGGCGGAAATCCCTTGACGTTCTCTGGATTGACAGGAGTAGGC    732
                     |..|||||||.||.|||||..||||.||..|.||.||.||.||.||.||.
BPUM_2014___g    683 CACAAATGGGAGGGAATCCTCTGACATTTGCCGGCTTAACGGGCGTTGGA    732

BSNT_03394___    733 GATCTGATTGTGACGTGCACAAGTGTTCATTCCAGAAACTGGCG-TGCGG    781
                     |||.||||.|||||.||.||||||||||||||..|.|||||||| ||| |
BPUM_2014___g    733 GATTTGATCGTGACATGTACAAGTGTTCATTCACGTAACTGGCGCTGC-G    781

BSNT_03394___    782 GCAATTTGCTCGGAAAAGGGTACAAGCTTGAAGATGTTCTTGAAGAGATG    831
                     |.|||.||||.||.||||||||.|||||||||||.||.|||||..|||||
BPUM_2014___g    782 GAAATCTGCTTGGTAAAGGGTATAAGCTTGAAGAAGTGCTTGAGAAGATG    831

BSNT_03394___    832 GGAATGGTAGTCGAAGGCGTCCGCACGACGAAAGCGGCTTACCAGCTTTC    881
                     ||.|||||.||.||||||||||||||.||.||||..|||||.|||||.||
BPUM_2014___g    832 GGGATGGTCGTTGAAGGCGTCCGCACAACAAAAGGCGCTTATCAGCTCTC    881

BSNT_03394___    882 GAAGAAATATGATGTTAAAATGCCGATTACAGAAGCTCTCCATCAGGTCC    931
                     .||..||||..|.||.|..||||||||||||||.|||||..|.||.||||
BPUM_2014___g    882 CAAAGAATACAAAGTCAGCATGCCGATTACAGAGGCTCTTTACCACGTCC    931

BSNT_03394___    932 T-ATTCAACGGACAAAAAGTGGAAACCGCTGTTGAATCTTTAATGGCGAG    980
                     | .||.||.||| ||||.|||||....|||||.|||||.||||||||..|
BPUM_2014___g    932 TGTTTGAAGGGA-AAAAGGTGGACGATGCTGTCGAATCATTAATGGCACG    980

BSNT_03394___    981 AGGGAAAACCCACGAGATGGAGGATTTGGTAAATACGTTTGAAAATCAAG   1030
                     .|.||||||.||.||.|||||.||..|.||.||.|.||||||.||.|||.
BPUM_2014___g    981 TGTGAAAACACATGAAATGGAAGACCTTGTGAACATGTTTGAGAACCAAA   1030

BSNT_03394___   1031 TGAAGTAA   1038
                     ..||.|||
BPUM_2014___g   1031 CAAAATAA   1038


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.