Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03411 and BPUM_2025

See Amino acid alignment / Visit BSNT_03411 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:56
# Commandline: needle
#    -asequence dna-align/BSNT_03411___ypeB.1.24716.seq
#    -bsequence dna-align/BPUM_2025___ypeB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03411___ypeB-BPUM_2025___ypeB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03411___ypeB-BPUM_2025___ypeB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03411___ypeB
# 2: BPUM_2025___ypeB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1428
# Identity:     962/1428 (67.4%)
# Similarity:   962/1428 (67.4%)
# Gaps:         153/1428 (10.7%)
# Score: 3006.5
# 
#
#=======================================

BSNT_03411___      1 ATGATCAGAGGAATTTTAATCGCCGTGCTTGGTATTGCAATAGTCGGTAC     50
                     ||||||||||||||.||.||.|||.|..|.||.|||||..|..||...||
BPUM_2025___y      1 ATGATCAGAGGAATATTGATTGCCATTTTAGGAATTGCTGTTATCTCAAC     50

BSNT_03411___     51 AGGCTACTGGGGATACAAAGAACACCAGGAAAAAGACGCAGTTCTTCTTC    100
                     |||.||.|||||.||.|||||.||.||.||||||||||||||.|||.|.|
BPUM_2025___y     51 AGGTTATTGGGGCTATAAAGAGCATCAAGAAAAAGACGCAGTGCTTTTGC    100

BSNT_03411___    101 ATGCTGAAAATAACTATCAGCGGGCGTTTCATGAGCTTACCTATCAGGTG    150
                     |.||.||.||||||||||||.||||.||.||.||..|.||.||.||.|||
BPUM_2025___y    101 ACGCAGAGAATAACTATCAGAGGGCCTTCCACGATTTAACGTACCAAGTG    150

BSNT_03411___    151 GATCAGCTTCATGATAAAATCGGAACAACACTTGCCATGAACAGCCAAAA    200
                     ||||||||.||.||.|||.|.|||.||||.|||||.||||||||||||..
BPUM_2025___y    151 GATCAGCTGCACGACAAACTTGGAGCAACGCTTGCGATGAACAGCCAATC    200

BSNT_03411___    201 ATCACTGTCGCCTGCA-TTGATC-GATGTGTGGAGGATTACATCAGAAGC    248
                     .||..|.||.||.||| |||  | |||||.|||||.||..|.||||||||
BPUM_2025___y    201 GTCGATTTCACCAGCACTTG--CAGATGTATGGAGAATGTCTTCAGAAGC    248

BSNT_03411___    249 TCATAACAGCGTCAGTCAGCTGCCGCTTACATTAATGCCGTTTAATAAAA    298
                     .|||||||..||.||||||||.|||||||||||||||||.|||||.||||
BPUM_2025___y    249 ACATAACAATGTGAGTCAGCTTCCGCTTACATTAATGCCTTTTAACAAAA    298

BSNT_03411___    299 CTGAAGAGCTATTATCAAAGATCGGCGATTTCAGCTATAAAACGTCAG--    346
                     |.|||||..|.||..|.||..||||.||.||.|||||.|||.|.||||  
BPUM_2025___y    299 CGGAAGAATTTTTGGCGAATGTCGGAGACTTTAGCTACAAATCATCAGTG    348

BSNT_03411___    347 ---------TCAGAGATTTGGACC--------AAAAGCCGCTTGATA-AA    378
                              |||||    ||.|||        ||||..|||     | ||
BPUM_2025___y    349 AAATCCCTATCAGA----TGAACCGTTAAACAAAAATACGC-----ACAA    389

BSNT_03411___    379 AACGAGTATACATCACTA----AATAAGCTATATCAGCAGTCCGAAGATA    424
                     |||.|  .|||.|||.||    ||.||||   |||          .||||
BPUM_2025___y    390 AACCA--TTACGTCATTATATCAACAAGC---ATC----------TGATA    424

BSNT_03411___    425 TACAAAATGAATTGCGTCATGTTCAGCACCTTGTCATGAGCAAAAACCTT    474
                     |.|||||.|||.||.|.||.||.|||||.||.|||.|.|.||||||..|.
BPUM_2025___y    425 TTCAAAACGAACTGAGACAAGTGCAGCATCTCGTCCTCAACAAAAATTTA    474

BSNT_03411___    475 CGCTGGATGGACGTAGAAATGGCCCTGGCTTCTGACGA--AAAACAAAGT    522
                     ...||||||||.||.||||||||.||.|||..||..||  .|||.||  |
BPUM_2025___y    475 AAATGGATGGATGTTGAAATGGCACTTGCTGATGGTGACCGAAAGAA--T    522

BSNT_03411___    523 GATAATACGATTATCAACAGCTTTAAAACAGTCGAAAAAAATGTTGGTGC    572
                     |||||.||.||.||..||.|.||.|||||||||||.|.|||||..|.|||
BPUM_2025___y    523 GATAACACCATCATTGACGGGTTGAAAACAGTCGAGAGAAATGCAGATGC    572

BSNT_03411___    573 ATTCTCCA-CTGGCACTGATCTTGGCCCGA-----GTTTC-ACCAGTACG    615
                     ||| |.|| .||.|   |||||.||.||||     ||.|| ||       
BPUM_2025___y    573 ATT-TGCAGATGTC---GATCTCGGACCGACAAATGTGTCGAC-------    611

BSNT_03411___    616 AAAAAAGAAG-AGAAA-----GGCTTCAGCCATCTGAAGGGAAAACAAAT    659
                          ||||| |||||     ||||.||..|||.|.||.||||||.|.||
BPUM_2025___y    612 -----AGAAGCAGAAACACGTGGCTACAATCATTTAAAAGGAAAAAAGAT    656

BSNT_03411___    660 TTCCGAACAGGAAGCAAAACAAATTGCTGAGCGCTTTGCCCCAGATGACA    709
                     |||..|..|.|||||.|.||..||.||..|||..||..|.||.|||.|  
BPUM_2025___y    657 TTCAAAGAAAGAAGCGATACGCATAGCCCAGCAATTCACACCTGATCA--    704

BSNT_03411___    710 ATTATTCAA----TTAAAGTGGTAAAGAGCGGAAAAAAAACAAATCGCGA    755
                       ||.||||    ||||.|||..|||.|||||||..|||||.|||||.||
BPUM_2025___y    705 --TAATCAACATTTTAAGGTGAGAAAAAGCGGAAGTAAAACCAATCGAGA    752

BSNT_03411___    756 TGTATATAGC--ATCAGCATGAAAGACCCAGACCATAAAGCAGTGA---T    800
                     |||.||.|||  ||||  |||..|||.||.||...||||||   ||   |
BPUM_2025___y    753 TGTGTACAGCTTATCA--ATGTCAGATCCTGATAGTAAAGC---GAATTT    797

BSNT_03411___    801 TTATATGGATATTAC-GAAGAAGGGCGGGCATCCGGTATACTTGATCCAA    849
                     .|||.|.||..|.|| ||| ||.||.||||||||.||.|||.|..|.|||
BPUM_2025___y    798 CTATTTAGACTTGACTGAA-AAAGGAGGGCATCCCGTTTACCTTCTTCAA    846

BSNT_03411___    850 AACAGGGAAGTGAAAGATCAGAAAATCAGTTTAAATGACGGATC-GAACC    898
                     ||..|.||.||.|||.|.|||||||||||||||||..|.|.||| ||| .
BPUM_2025___y    847 AATCGAGACGTAAAAAAACAGAAAATCAGTTTAAACCAAGCATCAGAA-A    895

BSNT_03411___    899 GAGCGCTTGCA--TTTTTAAAGAAAAACGGATTTGAAACAGA-TGATTTG    945
                     .|||.||  ||  |||||||||||..|.||||||||..|||| |.|||  
BPUM_2025___y    896 AAGCACT--CAGCTTTTTAAAGAAGCAAGGATTTGATGCAGAGTCATT--    941

BSNT_03411___    946 CAAATT-GATGAAAGTGCCCAATATGATAAAATCGGTGTATTTTCATATG    994
                     |.|.|| |||||||||||.||||.||||||.||||||||||||.|.||||
BPUM_2025___y    942 CCATTTAGATGAAAGTGCGCAATTTGATAATATCGGTGTATTTACCTATG    991

BSNT_03411___    995 TTCCTGTTGAAAATAAAGTCCGGATGTACCCGGAGGCAATTCGTATGAAA   1044
                     |.||..|..||||.||.||.|.|.||||.||.||....|||||.|||||.
BPUM_2025___y    992 TACCACTACAAAAAAATGTACTGCTGTATCCAGATAGTATTCGCATGAAG   1041

BSNT_03411___   1045 GTGGCCTTGGATGACGGTGAGGTTGTCGGCTTTTCAGCAAGAGACTTCCT   1094
                     ||.||.||.|||||.||.||.||.||.||.||||||||||.|||||...|
BPUM_2025___y   1042 GTCGCATTAGATGATGGAGAAGTGGTTGGATTTTCAGCAAAAGACTATTT   1091

BSNT_03411___   1095 CACATCTCACAGAAAAAGAACCAT------ACCTAAGCCTGCAATTACTG   1138
                     .||...|||.|.||.||||..|||      ||||||      |||..|..
BPUM_2025___y   1092 AACGAATCATAAAACAAGAGACATCAAAGCACCTAA------AATCTCAC   1135

BSNT_03411___   1139 AAGCAGAGGCAAAGTCTAAATTAAATAAAAATGT-ACAAGTGAGAGAAA-   1186
                     ||..|||.||.|||...|.|.|.|||.|..|||| |.||..|| |||.| 
BPUM_2025___y   1136 AAAAAGAAGCGAAGAAAACACTCAATCAGCATGTGAAAATCGA-AGATAC   1184

BSNT_03411___   1187 -CAAGGCTCGC-TTTGATTACAAATGAACTAGGTC--AAGAAGTGTTATG   1232
                      ||.|  |.|| .||| ||..|||.||  ||.|||  |||||||.|||||
BPUM_2025___y   1185 TCATG--TGGCGATTG-TTCAAAACGA--TATGTCAGAAGAAGTTTTATG   1229

BSNT_03411___   1233 TTACGAAATGCTTGGAACAATTGAAAATGACACATTCAGAATGTATATCA   1282
                     .||.||..|.||||||||.||..|||||||.||.|.|.||||||..||.|
BPUM_2025___y   1230 CTATGAGTTCCTTGGAACGATAAAAAATGATACGTACCGAATGTTCATTA   1279

BSNT_03411___   1283 ATGCCAAAGACGGAT--CGGAAGAAAAG-----GTTGAAAAACTAAAAAA   1325
                     |||       |||||  |||||.|.|||     ||.||.|||||||||||
BPUM_2025___y   1280 ATG-------CGGATACCGGAAAAGAAGAACGAGTAGATAAACTAAAAAA   1322

BSNT_03411___   1326 TGCAGAACCTATATATAAAGACCTATAA   1353
                     .||||||||||||||||||||||||||.
BPUM_2025___y   1323 CGCAGAACCTATATATAAAGACCTATAG   1350


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