Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03412 and BPUM_2026
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_03412___sleB.1.24716.seq
# -bsequence dna-align/BPUM_2026___sleB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03412___sleB-BPUM_2026___sleB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03412___sleB-BPUM_2026___sleB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03412___sleB
# 2: BPUM_2026___sleB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 993
# Identity: 659/993 (66.4%)
# Similarity: 659/993 (66.4%)
# Gaps: 156/993 (15.7%)
# Score: 2068.0
#
#
#=======================================
BSNT_03412___ 1 ATGAAGTCCAAAGGATCGATTATGGCATGTCTCA------------TCCT 38
|||.| |||| ||.|||.||| ||||
BPUM_2026___s 1 ATGGA---CAAA------------GCTTGTTTCATGAAAAAAATCGTCCT 35
BSNT_03412___ 39 TTTTTCCTTTACAATAACGACGTTTT----------TCAAT-------AC 71
|.| |||..|||| ||||.| |||.| ||
BPUM_2026___s 36 TAT---CTTCTCAAT-----CGTTCTACTCGCAACCTCACTGATGACAAC 77
BSNT_03412___ 72 TGAAACCATCTCTGCCTTTTCGAATCAGGTCATTCAAAGAGGGGCAACCG 121
|||||..|.....|||||..|.|.|||.||||||||..|.||.|||||.|
BPUM_2026___s 78 TGAAAAAAGTGAAGCCTTCACAAGTCAAGTCATTCAGCGTGGTGCAACAG 127
BSNT_03412___ 122 GGGACGATGTGGTCGAACTTCAGGCGCGTCTTCAATACAACGGATATTAT 171
|.||.|||||.|||||.||.||.||.||.||.||||||||.||.|.|||.
BPUM_2026___s 128 GAGAAGATGTAGTCGAGCTGCAAGCACGGCTCCAATACAATGGCTTTTAC 177
BSNT_03412___ 172 AACGGAAAAATTGACGGGGTTTATGGATGGGGGACGTACTGGGCAGTTCG 221
||.||.||||||||.||.||.|||||.|||||||||||||||||.|||||
BPUM_2026___s 178 AATGGCAAAATTGATGGTGTATATGGCTGGGGGACGTACTGGGCCGTTCG 227
BSNT_03412___ 222 GAATTTTCAGGATCAATTCGGGTTAAAAGAGGTTGACGGCCTTGTAGGAG 271
.||.|||||....||||..||..||||..||||.|||||.||||||||
BPUM_2026___s 228 CAACTTTCAAAGCCAATATGGTGTAAAGAAGGTCGACGGACTTGTAGG-- 275
BSNT_03412___ 272 CTAAAACAAAGCAAA-----CCTTAATATGT----AAATCAAAATACTAT 312
.||||||| |||| .|||| || ||..|||||||||||
BPUM_2026___s 276 --TAAACAAA-CAAAAAGCCTCTTA----GTTCAAAAGACAAAATACTAT 318
BSNT_03412___ 313 CGTGAATATG-TCATGGAACAACT-CAATAAAGGGAATACATTCACGCAT 360
...||.|.|| ||| |.|.||.|| ||| ||.||||||...||.||.|||
BPUM_2026___s 319 AAAGACTTTGTTCA-GCAGCAGCTGCAA-AAGGGGAATGAGTTTACCCAT 366
BSNT_03412___ 361 TA---CGGAAAAATTCCGCTAAAGT-ATCAG---ACGAAA---CCATC-A 399
|| |||.||| ||.|| | ||||| |||||| |||.| |
BPUM_2026___s 367 TATGGCGGGAAA---CCTCT----TGATCAGCAAACGAAAGCTCCAGCGA 409
BSNT_03412___ 400 AAAGCAGCAACACAAAAGGCAAGACA--ACAA---GCAGAAGCACGGCAG 444
||||.|| ..||||||| .|||||| .||| |||.||| ||
BPUM_2026___s 410 AAAGAAG-TTCACAAAA--AAAGACAGCTCAAGGTGCAAAAG------AG 450
BSNT_03412___ 445 AAACAGCCTGCGGAAAAAA--CAACGCAGCAGCCT----AAAG-CGAATG 487
||.| |||||| |||.| .|.|||.| |||| | ||
BPUM_2026___s 451 AATC---------AAAAAAGTCAAAG-TGGAGCATCTGGAAAGTC---TG 487
BSNT_03412___ 488 CGAATAAACAGCAAAACAATACACCAGCA---AAAGCAA-----GAAA-A 528
|| ||||||..|..|||| ||||| |||.||| |||| |
BPUM_2026___s 488 CG---AAACAGTCAGGCAAT----CAGCAAGCAAATCAAACACCGAAACA 530
BSNT_03412___ 529 CAGGATGCGGTAGCAGCGAACATGCCTGGTGGATTTTCCAACAACGATA- 577
.|.| |||||.||||||||.|||||.|||||.||.||.||||
BPUM_2026___s 531 AACG--------GCAGCCAACATGCCAGGTGGTTTTTCTAATAATGATAT 572
BSNT_03412___ 578 TCAGGCTGCTT-GCTCAAGCGGTTTATGGCGAAGCCCGGGGCGAGCCGTA 626
||| ||| ||| .|.||||||||.|||.|.|||||..|.|||||||||||
BPUM_2026___s 573 TCA-GCT-CTTATCACAAGCGGTATATAGTGAAGCAAGAGGCGAGCCGTA 620
BSNT_03412___ 627 CGAGGGACAGGTTGCTATTGCAGCAGTCATTTTAAACCGTTTGAACAGCC 676
.||.|||||.||.||.||.||.||.|||||.||||||||||||||||.|.
BPUM_2026___s 621 TGAAGGACAAGTGGCGATCGCTGCCGTCATCTTAAACCGTTTGAACAACT 670
BSNT_03412___ 677 CGTTATTTCCAAATTCAGTAGCGGGGGTTATTTTTGAGCCGCTTGCCTTC 726
||...|||||||||.||.|.||.||.|||||||||||.||||||||.||.
BPUM_2026___s 671 CGACTTTTCCAAATACAATCGCAGGTGTTATTTTTGAACCGCTTGCATTT 720
BSNT_03412___ 727 ACAGCAGTAGCCGACGGACAAATTTACATG-CAGCCGAATGAAACGGCAC 775
|||||.||.||.||.||.|||.||||.||| || ||.||||||||.|||.
BPUM_2026___s 721 ACAGCTGTGGCGGATGGTCAATTTTATATGTCA-CCTAATGAAACTGCAA 769
BSNT_03412___ 776 GAGAAGCAGTGCTGGATGCCATCAATGGCTGGGACCCATCAGAGGAAGCA 825
.|.||||.||..|.||||||||.||.||||||||||||||.|||...||.
BPUM_2026___s 770 AAAAAGCTGTATTTGATGCCATTAACGGCTGGGACCCATCTGAGAGTGCC 819
BSNT_03412___ 826 CTTTACTACTTTAATCCGGATACGGCTACAAGTCCGTGGATTTGGGGGCG 875
.|.||.|||||||||||.|||||.||.||.||.||.|||||||||||..|
BPUM_2026___s 820 GTCTATTACTTTAATCCTGATACAGCGACTAGCCCATGGATTTGGGGTAG 869
BSNT_03412___ 876 TCCGCAGATTAAAAGAATCGGTAAACACATTTTCTGTGAGTAG 918
.||.||.||||||.|.||.||.|||||.||||||||.||.|||
BPUM_2026___s 870 ACCACAAATTAAACGCATTGGGAAACATATTTTCTGCGAATAG 912
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