Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03423 and BPUM_2032

See Amino acid alignment / Visit BSNT_03423 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:56
# Commandline: needle
#    -asequence dna-align/BSNT_03423___ypbF.1.24716.seq
#    -bsequence dna-align/BPUM_2032___ypbF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03423___ypbF-BPUM_2032___ypbF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03423___ypbF-BPUM_2032___ypbF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03423___ypbF
# 2: BPUM_2032___ypbF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 498
# Identity:     253/498 (50.8%)
# Similarity:   253/498 (50.8%)
# Gaps:         159/498 (31.9%)
# Score: 634.5
# 
#
#=======================================

BSNT_03423___      1 ATGGAATCCTT---ATGGAATCAGC-------TGGATCAGTTTACAGACG     40
                     |||    .|||   |.|.|||||||       |||||||           
BPUM_2032___y      1 ATG----ACTTTGCACGCAATCAGCCGCTATATGGATCA-----------     35

BSNT_03423___     41 CGCCGACCAAACAG---ATGCTCCAAGCGCTTG-TAAAACGAAAACAAAA     86
                      ||||||   ||||   |||.|..||.|| ||| |.|||.||||.|..||
BPUM_2032___y     36 -GCCGAC---ACAGAAAATGATGGAAACG-TTGATCAAAAGAAAGCTTAA     80

BSNT_03423___     87 ATTCGAAAATTATGCAGCACAATGCCGCAGATGGCGATGGGCTTCACTTA    136
                     ||..||....|.|||...|||.|||...||.||||.||||.|..|.|||.
BPUM_2032___y     81 ATATGAGGGCTTTGCCAAACAGTGCAAAAGGTGGCAATGGACAGCCCTTT    130

BSNT_03423___    137 TCTGCCTAGGC--TTATTATGTGTTA-----TGATCATGAGCA---AAAG    176
                     |.|..|| |||  ||.||.|||.|||     ||||.|.| |||   ||| 
BPUM_2032___y    131 TGTCACT-GGCAATTCTTTTGTTTTATTTTGTGATAACG-GCAAATAAA-    177

BSNT_03423___    177 CCCGGAGCCTCAGCTTATACTTCA---AGA---------------AATAC    208
                        ||||.|||       .|||||   |||               |.|.|
BPUM_2032___y    178 ---GGAGGCTC-------TCTTCAGCCAGAAGCAATGATTGCAACACTGC    217

BSNT_03423___    209 TCAGCCAT-ACCTTTTATTTATTTTGGATGCTGGCAACC----------G    247
                     ||.|.||| |..|.|| |.||||||||||..|||    |          |
BPUM_2032___y    218 TCGGTCATGAGGTCTT-TCTATTTTGGATCATGG----CTGAGGTGTTTG    262

BSNT_03423___    248 CTTTTGCCTACTGCACTTCATATTATTTCAAGAAAAAGGAAGAAAAATCC    297
                     |||||   || ||  ||||.|||||||..||||||||.||||||||..|.
BPUM_2032___y    263 CTTTT---TA-TG--CTTCTTATTATTATAAGAAAAAAGAAGAAAAGGCT    306

BSNT_03423___    298 GAGACCGATTTCCATAAACTGAGATGTGAAATTAT-TCAGAAAAGCACTG    346
                     |||...||.|..|||...||.||||||||.||||| .||.||||||||.|
BPUM_2032___y    307 GAGGATGAATATCATCGCCTCAGATGTGAGATTATAACAAAAAAGCACAG    356

BSNT_03423___    347 ATCTCTGGCCGCAGCCCGATAAATGGAAGGCGAGAGAGTCTGTTTTTCAT    396
                     |..|.||||||||..|.|||.|.|||||.|.|.|.||             
BPUM_2032___y    357 ACTTATGGCCGCAATCAGATCAGTGGAAAGAGCGTGA-------------    393

BSNT_03423___    397 ATGATGAAGCACAAATATGACATTAATCTATATTTTGAAAGTAAATAA    444
                                                                     
BPUM_2032___y    393 ------------------------------------------------    393


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