Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03427 and BPUM_2036
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:57
# Commandline: needle
# -asequence dna-align/BSNT_03427___ypbB.1.24716.seq
# -bsequence dna-align/BPUM_2036___ypbB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03427___ypbB-BPUM_2036___ypbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03427___ypbB-BPUM_2036___ypbB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03427___ypbB
# 2: BPUM_2036___ypbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1220
# Identity: 667/1220 (54.7%)
# Similarity: 667/1220 (54.7%)
# Gaps: 328/1220 (26.9%)
# Score: 1587.0
#
#
#=======================================
BSNT_03427___ 1 TTGTCATTAAATTACTTCGATATTATGGTTCTCGATTGCCTTTGCAAAAT 50
.||.|..|..||||.||.|||.|.|||.|..|.||..||.|.|..|||.|
BPUM_2036___y 1 ATGACTCTTCATTATTTGGATGTCATGTTAATGGACAGCGTATATAAATT 50
BSNT_03427___ 51 AAACGGGGAACGGTCGGGAAGCGCTGTTTTTCACCTATTCAAAGGCAAGA 100
.|||||.|||||.||....||.|||||.|..||.||.||.|||||.||.|
BPUM_2036___y 51 GAACGGTGAACGCTCCATTAGTGCTGTCTACCATCTTTTTAAAGGAAAAA 100
BSNT_03427___ 101 GATCGTCACAAACCATTCAAGATGCCGGCTTATTTCAGACTGCAAAATAC 150
.|||.|||||||||||.||.||||||.||||.|||.||..|.|.|..|||
BPUM_2036___y 101 AATCATCACAAACCATACAGGATGCCAGCTTGTTTGAGCTTTCCAGGTAC 150
BSNT_03427___ 151 TTTGGAATGGCGGCGCAATGTT------------CGAGA----AGCGATG 184
|| |||| |||| ||||| ||
BPUM_2036___y 151 TT--------CGGC----TGTTACCCGGGGTTTACGAGAGACCAG----- 183
BSNT_03427___ 185 TTTCTGAGTC-----GCTTGACAAGCTT---GAAAAGCA-TTCAT----- 220
||||.|| ||||.| ||.||| |||||||| |.|||
BPUM_2036___y 184 ---CTGAATCGCTCTGCTTTA-AAACTTGAAGAAAAGCACTACATTAGAA 229
BSNT_03427___ 221 ------AT----CTCTC-GCCAATGTCTGAAACAGATACATACAAAGTGA 259
|| |.||| || ||..|||||.|||
BPUM_2036___y 230 AAAACGATGAGACACTCAGC--ATCACTGAAGCAG--------------- 262
BSNT_03427___ 260 CAGCCAGCG---GC----GCAGCAGTTTT------AAGGCATGCCCTTAG 296
|.||||| || .|||||.|||| ||...||||| ||
BPUM_2036___y 263 --GGCAGCGAATGCTACACCAGCATTTTTCTGAAAAACCGATGCC--TA- 307
BSNT_03427___ 297 CGAGCGGCCTTGGCCCGTTCATTGTCACGGCGCTCATTATCAGCAGGCTG 346
||| |||.|||.||.||..|.|||||
BPUM_2036___y 308 --------CTT---------ATTTTCATGGTGCCAAATATCA-------- 332
BSNT_03427___ 347 CCGGTG------------TGCTTTGGAAAAGGCTTTCGCTGCTTGTGCAG 384
|| ||||.||||..||||||||..|.|||||.||.
BPUM_2036___y 333 ----TGATAAAGCAAAGATGCTATGGATGAGGCTTTCTTTACTTGTACAA 378
BSNT_03427___ 385 GTCCTATC---CCATA---------AACAGCAAGGGAGCAGGCAGTATAT 422
||.||.|| ||||| .|||.||| |||.|
BPUM_2036___y 379 GTGCTTTCTCACCATATGGCTGGATCACATCAA------------TATGT 416
BSNT_03427___ 423 CCCTGTCACAAAGGATCATAAGA-----CACTTCA---CTGGGTAAAGAA 464
.|| |..|||||| ||| ||.|||| |||| |.|||
BPUM_2036___y 417 TCC-GATACAAAG-------AGATGTCTCAGTTCAAAGCTGG---ACGAA 455
BSNT_03427___ 465 ATACCTGTCCCGGCATAC-GGATCATATAGAGATGGCAAA-----AAGCC 508
|| ||.|...| |.|| |.|||| |||.| ||||.
BPUM_2036___y 456 AT--CTTTTTTG--AAACAGCATCA----------GCAGAAGAGCAAGCT 491
BSNT_03427___ 509 TT-------TTTGCCATGCTTGAGGCGCATTTGAAAAA-----GAT---- 542
|| |.|| ||| |.||| |.|.|||||| |||
BPUM_2036___y 492 TTCAAAAGATCTG-CAT-CATGA-----ACTAGAAAAACTTCTGATGTAC 534
BSNT_03427___ 543 -----TGAAAACAAAGCAGCGCAAATTTTTGTCTACTCCTTAACCTCGCA 587
|||..|..|.||||.| ||||||||.|||||.||.|||||..|
BPUM_2036___y 535 CTAAGTGAGCAAGAGGCAGTG---ATTTTTGTTTACTCATTGACCTCAAA 581
BSNT_03427___ 588 CCATCGGATCGGTTATAC-TAGCAGGCAGCTTGCTGATACGCTGAAAGAA 636
..|.||.|||||...||| ||.|| |||..|.||.||...|.||||||||
BPUM_2036___y 582 TGAACGAATCGGGCGTACGTATCA-GCAAATGGCGGAGTGGATGAAAGAA 630
BSNT_03427___ 637 GACGAATGGTATGTCTATATCATGTTTTGGGCTTCGGTA---CATTATTT 683
||.|..||||||||.||..|..|.||||||..| ||| ||||||||
BPUM_2036___y 631 GATGTGTGGTATGTGTACCTGCTTTTTTGGAAT---GTACTCCATTATTT 677
BSNT_03427___ 684 TATTCATTCTCTTCCGG-------AGTGTGA-----AGATGCTTTGTTAA 721
||||||.||| | || |||| .||| |||| .
BPUM_2036___y 678 TATTCAATCT------GCCCAAAAAG-GTGAGGCACCGAT--TTTG---C 715
BSNT_03427___ 722 AGGATCTCCTTTCTGATGTGCACTTAGA---TAATGCCCTG---ACAGAG 765
||.|.|||.| |.||| ||.|.|| |||...|.|| |||...
BPUM_2036___y 716 AGCAACTCAT-----AGGTG-ACCTTGAATTTAAACGCGTGTTAACAACT 759
BSNT_03427___ 766 TCGACGAGGAAAACA-TGGCAGATGGTCAAACAAGGGTTTCCGATA--CA 812
||.||....|||||| ||| ||.|.|||.||.||||.||| |||| .|
BPUM_2036___y 760 TCTACTCAAAAAACACTGG-AGCTTGTCCAAAAAGGATTT--GATATTGA 806
BSNT_03427___ 813 TCGAATTGCTGAAA-----TCAGAAAGCTGAAAACA-GCGACGATTGAAG 856
.|.|||||||.|.| ||| |.||||.| ||.||||||||||
BPUM_2036___y 807 ACAAATTGCTCACATTCGTTCA------TTAAAAAAGGCAACGATTGAAG 850
BSNT_03427___ 857 ACCACATTGTCGAGATTTCTCTCCATGAGCC-TGCGTT------------ 893
|.||.|||||.|||.|.||..|.|||||||| .||.||
BPUM_2036___y 851 ATCATATTGTAGAGCTGTCGATACATGAGCCAAGCTTTTCAATAGAGCCA 900
BSNT_03427___ 894 TATGATTAATGATTATGTATCAGCAGAAGACCAGC-TCCAAATC--GCAG 940
|||| |||.||| ||||||.|||| ..|||.|| ||.|
BPUM_2036___y 901 TATG-----TGAGTAT--------AGAAGAGCAGCAGGCAATTCTTGCTG 937
BSNT_03427___ 941 AGTTTGCCAAACGGATGCGGACGAATAAAATCAAACAAATTCGCGACGGG 990
|.||.|||..|.|||..||.||||||||.||.|..|||...||....
BPUM_2036___y 938 ---TAGCTAAAGAGCTGCAAACAAATAAAATGAAGCTGATTAAAGAAAAA 984
BSNT_03427___ 991 CTGGAACAGCGGTTCAGCTACTTTCAAATCAGACTGGCATTGACAAAGCA 1040
||.||.||.|..||.|..||.||||||||.|||.|||||.||||||.|..
BPUM_2036___y 985 CTCGAGCATCCATTTACTTATTTTCAAATAAGATTGGCACTGACAAGGAT 1034
BSNT_03427___ 1041 GGTG-CAGCAATATGACTAA 1059
|||| .||||| |||..|||
BPUM_2036___y 1035 GGTGAAAGCAA-ATGGATAA 1053
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