Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03437 and BPUM_2042
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:57
# Commandline: needle
# -asequence dna-align/BSNT_03437___sigX.1.24716.seq
# -bsequence dna-align/BPUM_2042___sigX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03437___sigX-BPUM_2042___sigX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03437___sigX-BPUM_2042___sigX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03437___sigX
# 2: BPUM_2042___sigX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 611
# Identity: 466/611 (76.3%)
# Similarity: 466/611 (76.3%)
# Gaps: 28/611 ( 4.6%)
# Score: 1774.5
#
#
#=======================================
BSNT_03437___ 1 ATGGAAGAAACCTTTCAATTATTATATGATACATATCATCAAGATTTGTA 50
|||.|.||||||||||||..|.||||||||.|.||.||||||||||||||
BPUM_2042___s 1 ATGCATGAAACCTTTCAAAAAATATATGATTCGTACCATCAAGATTTGTA 50
BSNT_03437___ 51 CCAATTTTTATTTTATATGGTAAAGGATAAAAACCAGACAGAAGACCTTC 100
|||.|||||||||||||||||.||.||||||||.|||.||||.||.||..
BPUM_2042___s 51 CCAGTTTTTATTTTATATGGTTAAAGATAAAAATCAGGCAGAGGATCTCG 100
BSNT_03437___ 101 TTCAAGAGGTTTATATCCGGGTATTAAATTCTTATCATACGTTTGAAGGA 150
||||.||||||||.|||||||||.|..|.||.|||.|.||.|||||||||
BPUM_2042___s 101 TTCAGGAGGTTTACATCCGGGTACTTCACTCATATAAAACTTTTGAAGGA 150
BSNT_03437___ 151 AGAAGCAGTGAAAAAACATGGCTATTGTCTATCGCACGCCATGTTGCGAT 200
||||||||.||.|||||||||||.||.||.||.||..|.|||||.||.||
BPUM_2042___s 151 AGAAGCAGCGAGAAAACATGGCTGTTTTCAATTGCGAGGCATGTGGCAAT 200
BSNT_03437___ 201 AGACTGGTTCCGTAAACAGCAAACAATCAGACAGCGTATACTCGGTACAT 250
.||.|||||.||.|||||||||||.||.|||||.||..|||||||.||.|
BPUM_2042___s 201 TGATTGGTTTCGCAAACAGCAAACCATTAGACAACGGGTACTCGGCACGT 250
BSNT_03437___ 251 TTGACTGGGATACACAGGATGTCAGGGAT-CAGCAATTGCTACCGGACGA 299
||||.|||||||..||||||||.|.|||| ||| |.|||||.||.|||||
BPUM_2042___s 251 TTGATTGGGATAAGCAGGATGTAAAGGATCCAG-ACTTGCTCCCAGACGA 299
BSNT_03437___ 300 ACTTGCCGTTCAACATGAAAATGTCCGGGAAATTTATGCTGCGCTTGATC 349
|||.||.||.||..||||||||||....|||||.|||||.||.|||||||
BPUM_2042___s 300 ACTGGCTGTGCAGGATGAAAATGTAAAAGAAATCTATGCCGCACTTGATC 349
BSNT_03437___ 350 AATGTACAATCGATCAAAGAGCTGTGATTATCTTGCGGTTTATTCAGGGA 399
|.||.||.||.||||||.|||||||.||.||.||..|.|||||.|||||.
BPUM_2042___s 350 AGTGCACGATTGATCAACGAGCTGTCATCATTTTAAGATTTATCCAGGGC 399
BSNT_03437___ 400 TATTCAATACA-GGAAACAGCCAAGGCTCTGCGCTTCTCGGAAAGCAAAG 448
||.||||| || |||.||.||.|||||.||....||||||||||||||||
BPUM_2042___s 400 TACTCAAT-CATGGAGACGGCAAAGGCGCTAAAGTTCTCGGAAAGCAAAG 448
BSNT_03437___ 449 TAAAAACGACCCAACACAGAGGGCTCAAAGTACTTCGGAAACATATGGAG 498
|.|||||.||.||.|||.||||.||.|||||.||.||.||||||||||||
BPUM_2042___s 449 TCAAAACAACGCAGCACCGAGGCCTGAAAGTGCTCCGAAAACATATGGAG 498
BSNT_03437___ 499 CTTTTGAGGGAGGAGCTAATGGATG---ATGAA---GTCAGAATGGAACG 542
|||||||.||||||||||.||.||| |.||| |||.||.||||.||
BPUM_2042___s 499 CTTTTGAAGGAGGAGCTAGTGAATGAAAACGAACAGGTCCGATTGGAGCG 548
BSNT_03437___ 543 AAGAACAGATAAAGGAGTTGTTAAGTCAACTTCC---------GG----C 579
||||||..||.||||.|||..|||||||.||||| || |
BPUM_2042___s 549 AAGAACGAATCAAGGTGTTACTAAGTCAGCTTCCAAAGGTGGAGGACAAC 598
BSNT_03437___ 580 AGTTAA----- 585
.|||.|
BPUM_2042___s 599 CGTTCATCTAA 609
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