Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03440 and BPUM_2045

See Amino acid alignment / Visit BSNT_03440 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:58
# Commandline: needle
#    -asequence dna-align/BSNT_03440___resD.1.24716.seq
#    -bsequence dna-align/BPUM_2045___resD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03440___resD-BPUM_2045___resD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03440___resD-BPUM_2045___resD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03440___resD
# 2: BPUM_2045___resD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 757
# Identity:     575/757 (76.0%)
# Similarity:   575/757 (76.0%)
# Gaps:          35/757 ( 4.6%)
# Score: 2267.0
# 
#
#=======================================

BSNT_03440___      1 ATGAAAGTAACAGAAGGAAAGCAGGGGGAAAACATGGACCAAACGAAC-G     49
                                                      |||||.||.|| ||| .
BPUM_2045___r      1 ---------------------------------ATGGAACACAC-AACTC     16

BSNT_03440___     50 AAACAAAAATATTAGTAGTTGATGACGAAGCCAGAATTCGCCGCCTTTTA     99
                     ||||.|||||||||||.||.|||||.||.||.||||||||||||||||||
BPUM_2045___r     17 AAACGAAAATATTAGTCGTAGATGATGAGGCAAGAATTCGCCGCCTTTTA     66

BSNT_03440___    100 AGAATGTATCTTGAACGTGAAAATTATGCTATAGATGAAGCTGAAAATGG    149
                     |.|||||||.|.||||||||||||||||..||.||||||||.||||||||
BPUM_2045___r     67 AAAATGTATTTAGAACGTGAAAATTATGAAATCGATGAAGCGGAAAATGG    116

BSNT_03440___    150 TGATGAAGCCATTGCCAAAGGGCTTGAAGCCAATTATGACTTAATTTTGC    199
                     .|||||.||||||...|||||.||..||.|..||||||||.|.|||||||
BPUM_2045___r    117 AGATGAGGCCATTCAAAAAGGACTCCAATCAGATTATGACCTCATTTTGC    166

BSNT_03440___    200 TTGATCTGATGATGCCGGGGACTGATGGAATTGAAGTGTGCCGGCAAATT    249
                     |.|||.|.||||||||.||.||.|||||.|||||||||||....||||||
BPUM_2045___r    167 TCGATTTAATGATGCCTGGCACAGATGGGATTGAAGTGTGTAATCAAATT    216

BSNT_03440___    250 CGTGAAAAAAAAGCGACACCCATTATTATGCTGACCGCAAAAGGAGAAGA    299
                     ||.||.|||||||||||.||.||.|||||||||||.||||||||||||||
BPUM_2045___r    217 CGAGACAAAAAAGCGACTCCAATCATTATGCTGACGGCAAAAGGAGAAGA    266

BSNT_03440___    300 AGCAAATCGGGTGCAGGGGTTTGAAGCGGGAACAGATGATTATATTGTTA    349
                     |||.||.||.|||||.|||||||||||.|||||.|||||.||.||.||.|
BPUM_2045___r    267 AGCCAACCGCGTGCAAGGGTTTGAAGCAGGAACGGATGACTACATCGTGA    316

BSNT_03440___    350 AGCCGTTCAGCCCGAGAGAAGTCGTGCTGCGTGTAAAGGCCCTTTTGAGA    399
                     ||||.||.|||||..|.|||||.||..|.|||||.|||||..|..|.|||
BPUM_2045___r    317 AGCCTTTTAGCCCACGTGAAGTTGTTTTACGTGTGAAGGCATTGCTCAGA    366

BSNT_03440___    400 AGAGCATCCCAAACCTCTTATTTCAATGCCAATACACCGACGAAAAATGT    449
                     |||.|.||.|||||.||||||.|||||.|....|||.|.||.|||.||||
BPUM_2045___r    367 AGATCTTCTCAAACGTCTTATCTCAATACTGGGACAACAACAAAAGATGT    416

BSNT_03440___    450 GCTCGTGTTTTCACATCTGTCAATAGACCATGATGCTCACCGCGTAACAG    499
                     .||.||||||||.|||||.|||||.|||||.|||||.||..|.|||||||
BPUM_2045___r    417 ACTTGTGTTTTCTCATCTTTCAATTGACCACGATGCGCATAGAGTAACAG    466

BSNT_03440___    500 CTGATGGAACAGAAGTGAGCCTGACGCCAAAAGAGTATGAGCTTCTATAT    549
                     |.|||||.|.|||.||.||.||.|||||.||.||.|||||||||.|||||
BPUM_2045___r    467 CCGATGGCAAAGAGGTCAGTCTCACGCCGAAGGAATATGAGCTTTTATAT    516

BSNT_03440___    550 TTCTTAGCGAAAACGCCTGACAAGGTGTATGATCGGGAAAAGCTTCTGAA    599
                     |||.|.||||||||.|||||.|||||.|||||..|.||.|||||..|.||
BPUM_2045___r    517 TTCCTTGCGAAAACACCTGATAAGGTTTATGACAGAGAGAAGCTGTTAAA    566

BSNT_03440___    600 AGAAGTGTGGCAATATGAGTTTTTTGGTGATTTACGGACAGTGGACACTC    649
                     ||||||.|||||.|||||.||.|||||.||.||..|.|||||.||.||.|
BPUM_2045___r    567 AGAAGTATGGCAGTATGAATTCTTTGGAGACTTGAGAACAGTCGATACCC    616

BSNT_03440___    650 ACGTCAAACGTTTGAGAGAGAAGCTGAACAAGGTATCTCCGGAAGCTGCG    699
                     ||||||||||..|..|.||.||.|||||.||.||.||.||.|||||||||
BPUM_2045___r    617 ACGTCAAACGACTTCGCGAAAAACTGAATAAAGTGTCACCAGAAGCTGCG    666

BSNT_03440___    700 AAAAAAATTGTCACAGTATGGGGTGTAGGTTATAAATTTGAGGTCGGCGC    749
                     ||||||||.||.||||||||||||||.||.||.|||||||||||||||||
BPUM_2045___r    667 AAAAAAATCGTGACAGTATGGGGTGTCGGGTACAAATTTGAGGTCGGCGC    716

BSNT_03440___    750 TGAATGA    756
                     |||||||
BPUM_2045___r    717 TGAATGA    723


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