Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03451 and BPUM_2052

See Amino acid alignment / Visit BSNT_03451 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:58
# Commandline: needle
#    -asequence dna-align/BSNT_03451___dacB.1.24716.seq
#    -bsequence dna-align/BPUM_2052___dacB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03451___dacB-BPUM_2052___dacB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03451___dacB-BPUM_2052___dacB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03451___dacB
# 2: BPUM_2052___dacB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1216
# Identity:     825/1216 (67.8%)
# Similarity:   825/1216 (67.8%)
# Gaps:         125/1216 (10.3%)
# Score: 2593.0
# 
#
#=======================================

BSNT_03451___      1 ------ATGCGC-ATTTTCAAAAA-------AGCAGT-ATTCGTGATCAT     35
                           ||||.| ||||  |||||       |||||| .|||        
BPUM_2052___d      1 ATGAACATGCCCTATTT--AAAAATTGGAACAGCAGTCCTTC--------     40

BSNT_03451___     36 GATTTCTTT------TCTTATTGC----AACCGTAAATGTGAATACAGCA     75
                        ||||.|      |||||.|||    ..||..|.|||..||   ||||
BPUM_2052___d     41 ---TTCTATTTACACTCTTACTGCCTTTTTCCTCACATGCCAA---AGCA     84

BSNT_03451___     76 CATGCTG---CTATAGATGTCAGTGCAAAAAGCGCGATCATTATTGACGG    122
                     .||| ||   .|||.|  ||.|||||||.||||||.||..|.||.||.||
BPUM_2052___d     85 GATG-TGTCATTATCG--GTGAGTGCAAGAAGCGCCATTTTAATAGATGG    131

BSNT_03451___    123 TGCGTCAGGCAGAGTGTTATATGCCAAGGATGAGCATCAAAAAAGGCGGA    172
                     ...||||||||||||..|||.||..|||||.||||||.|||||||..|.|
BPUM_2052___d    132 ACAGTCAGGCAGAGTCCTATTTGGAAAGGACGAGCATGAAAAAAGAAGAA    181

BSNT_03451___    173 TCGCGAGCATCACAAAAATTATGACCGCCGTCCTCGCCATCGAATCCGGC    222
                     ||||.||.||.||.|||||||||||.||.||..|.|||||.|||||.||.
BPUM_2052___d    182 TCGCCAGTATTACGAAAATTATGACGGCGGTATTAGCCATTGAATCAGGG    231

BSNT_03451___    223 AAAATGGATCAAACGGTGACGGTTTCGGCAAATGCTG------TCAGAAC    266
                     ||||||.|..|.||.||.|..||.||    ||.|| |      ||| |.|
BPUM_2052___d    232 AAAATGAAAGACACCGTCAAAGTATC----AAAGC-GCGCGATTCA-AGC    275

BSNT_03451___    267 AGAAGGCTCCGCCATTTATTTAACAGAAGGTCAAAAAGTGAAGCTAAAAG    316
                     |||.|||||..|.||||||||||.||||||.||.||.||||..|||.|||
BPUM_2052___d    276 AGAGGGCTCATCGATTTATTTAAAAGAAGGGCAGAAGGTGAGCCTAGAAG    325

BSNT_03451___    317 ATCTTG-TGTATGGCCTGATGCTAAGATCAGGAAACGACGCCGCTGTCGC    365
                     || ||| ..||.||.||.|||||..|.||.|||||.||.||.|||||.||
BPUM_2052___d    326 AT-TTGACATACGGGCTTATGCTGCGTTCTGGAAATGATGCAGCTGTTGC    374

BSNT_03451___    366 GATTGCTGAGCATGTCGGTGGGAGCCTCGATGGGTTTGTTTATATGATGA    415
                     .|||||.||||||||.||.||.|||.|.||.||.|||.|||.||||||||
BPUM_2052___d    375 CATTGCAGAGCATGTGGGCGGCAGCTTAGAAGGATTTATTTTTATGATGA    424

BSNT_03451___    416 ATCAAAAAGCCGAGCAGCTTGGTATGAAAAACACCCGTTTTCAAAACCCG    465
                     |.||||||||.....|.||.||.|||.|.||.||...|||||||||.|||
BPUM_2052___d    425 ACCAAAAAGCGTCTGAACTAGGAATGGAGAATACGAATTTTCAAAATCCG    474

BSNT_03451___    466 CACGGATTGGACGACCATGAAAATCATTATTCAACAGCCTATGACATGGC    515
                     ||.|||.|.||.||.|||.|.||.|||||||||.||||||||||||||||
BPUM_2052___d    475 CATGGACTCGATGATCATAAGAACCATTATTCATCAGCCTATGACATGGC    524

BSNT_03451___    516 CATTTTAACTAAG-TATGCTATGAAGCTGAAAGACTATCAAAAGATTTCA    564
                     .||.||||| ||| ||.||.|||.|||..|||.|.||||||||.|||.|.
BPUM_2052___d    525 AATCTTAAC-AAGATACGCCATGGAGCATAAACAATATCAAAAAATTGCG    573

BSNT_03451___    565 GGCACAAAAATATACAAAGCGGAAACGATGGAAAGCGTA-TGGAAAAACA    613
                     |||||.|...|.||.|||||..|||||||||||.|| || ||||||||.|
BPUM_2052___d    574 GGCACGACTTTCTATAAAGCAAAAACGATGGAAGGC-TATTGGAAAAATA    622

BSNT_03451___    614 AAAATAAACTGCTGACCATG--CTATATCCGTA--CAGCACAGGAGGAAA    659
                     ||||.||.||.||.||  ||  .||||||..||  ||  ||.|||||.||
BPUM_2052___d    623 AAAACAAGCTCCTCAC--TGGTTTATATCAATATTCA--ACTGGAGGGAA    668

BSNT_03451___    660 AACAGGCTATACAAAACTTGCAAAACGGACACTGGTCTCTACGGCTTCAA    709
                     |||.||.||||||||||||||||||||.|||||.||.|||||.|||.|||
BPUM_2052___d    669 AACGGGATATACAAAACTTGCAAAACGCACACTTGTTTCTACAGCTGCAA    718

BSNT_03451___    710 A--GGACGGCATTGACCTGATAGCCGTCACCATTAATGACCCTAATGATT    757
                     |  |||..|||  |..|||||.||.||.||||||||||..||..||||||
BPUM_2052___d    719 AAGGGAATGCA--GCGCTGATCGCTGTGACCATTAATGCGCCAGATGATT    766

BSNT_03451___    758 GGGATGACCATATGAAGATGTTTAACTATGTGTTTGAGCATTATCAAACC    807
                     ||.|.||.|||||....||||||.|.||||..|||||.||.|||.||||.
BPUM_2052___d    767 GGAAGGATCATATCTCTATGTTTGAATATGCATTTGATCACTATAAAACG    816

BSNT_03451___    808 TATTTAATTGCAAAAAAAGGGGATATTCCAAAGC-----TGAAAGGCACA    852
                     ||..||.||||..||||| ||.|.|.||    ||     |.|||||.||.
BPUM_2052___d    817 TACGTACTTGCTGAAAAA-GGAAGACTC----GCTTCATTAAAAGGAACC    861

BSNT_03451___    853 TTTTATGAATCGAAGGCTTTTATCAAACGTGATATCACCTATTTGCTGAC    902
                     |||||.|||...|||||.|||||||||||||||.|...||||||..|.|.
BPUM_2052___d    862 TTTTACGAAAAAAAGGCATTTATCAAACGTGATGTGGACTATTTTTTAAA    911

BSNT_03451___    903 TGAAGAGGAAAAAGAAGAT-GTGAAAATTAATACCACACTGCTCAAGC--    949
                     ||||||.||.||| |||.| ||..|||||.|.|||..|.||||.|..|  
BPUM_2052___d    912 TGAAGATGAGAAA-AAGCTAGTAGAAATTGAAACCGAAATGCTTACTCCT    960

BSNT_03451___    950 CGAAAAAAGCATGGGAAAAAGATGCCTCGAA--AATCCCTGACATCGTAG    997
                     |.|||.|||  ||||.||||.|.||  ||||  .||.||.||..|.||||
BPUM_2052___d    961 CAAAAGAAG--TGGGCAAAAAACGC--CGAAGCCATTCCAGATGTTGTAG   1006

BSNT_03451___    998 GGCACATGGAGAT-------CATGTTCAACGATGCAACCATCGCAAAAGT   1040
                     |..|.|||..|.|       .|||.|||  |.||     ||||...||||
BPUM_2052___d   1007 GAAAAATGACGTTTTTATTAGATGGTCA--GGTG-----ATCGAGCAAGT   1049

BSNT_03451___   1041 GCCGATCTATTATGAAAATGAGCGGCATCAAAAACCGAAGAAA------C   1084
                     .|||||||.||||||||||.|.||..|||.||..||..|.|||      |
BPUM_2052___d   1050 ACCGATCTTTTATGAAAATAAACGAAATCGAATGCCACAAAAAAGCTTCC   1099

BSNT_03451___   1085 AATTTTTTGAAACGTTTAAATCAATCTTTCTGA-ATGCGGCAGGCGGAGC   1133
                     ||      ||||.||||||.||..||||||.|| || ||..|||||||.|
BPUM_2052___d   1100 AA------GAAATGTTTAAGTCTGTCTTTCAGACAT-CGATAGGCGGATC   1142

BSNT_03451___   1134 AAAATGGTCAATATAA   1149
                     ...|||||||||.|||
BPUM_2052___d   1143 TTCATGGTCAATCTAA   1158


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