Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03453 and BPUM_2053
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:58
# Commandline: needle
# -asequence dna-align/BSNT_03453___ypuI.1.24716.seq
# -bsequence dna-align/BPUM_2053___ypuI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03453___ypuI-BPUM_2053___ypuI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03453___ypuI-BPUM_2053___ypuI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03453___ypuI
# 2: BPUM_2053___ypuI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 635
# Identity: 301/635 (47.4%)
# Similarity: 301/635 (47.4%)
# Gaps: 250/635 (39.4%)
# Score: 704.5
#
#
#=======================================
BSNT_03453___ 1 ATGAAAGAAGCAAAATGTGAGAGACAAAGACATGAGGGGAAGATACCAAA 50
BPUM_2053___y 0 -------------------------------------------------- 0
BSNT_03453___ 51 CGAAATGGGACATTCGATTGTGCGAGCGCAGACTCAA------AAAACAG 94
||||.||||..||.||| ..||.||||| .||.|||
BPUM_2053___y 1 ----ATGGCACATATGAATGT------AAAGGCTCAAGTTGATCAAGCAG 40
BSNT_03453___ 95 GCGAATTCTTATCAATGGTTG---------TCAATACCG------TGAAC 129
|||..||.|||||||.||||| |.||| | |||||
BPUM_2053___y 41 GCGTCTTTTTATCAAAGGTTGCAACTGAAATGAAT---GGTTTTCTGAAC 87
BSNT_03453___ 130 GA--TTACCTAA------ATCAAACGACGCTTGAGTCCTTACAGGCTGAA 171
|| .|||||.| ||.|||||| ||.|..||| .|.||.|||
BPUM_2053___y 88 GAAGCTACCTTATCAAGTATGAAACGA---TTAAACCCT--GAAGCGGAA 132
BSNT_03453___ 172 TTGCCTATTGAAAAAGGATACTGCTGTGATGTGCTGAGCACTCTGAGAAG 221
||||||| || |||||..|..|||..||
BPUM_2053___y 133 --GCCTATT--------AT-----TGTGACATATTGAATAC--------- 158
BSNT_03453___ 222 AATGGCAGTATTTTGTGAAGGAGGC--GCAG----AAGCGTGCCGCCGTC 265
||| |.|||.|| |||| .||||.|
BPUM_2053___y 159 ---------ATT-----ACGGAAGCTTGCAGTGTACAGCGAG-------- 186
BSNT_03453___ 266 TCCTGATGCAGGAGC-CTTTTCAGGA-----AGCCAG-AGCGGAAA---- 304
|||||||..|| .|||.||||| |||||| |||.||.|
BPUM_2053___y 187 ----GATGCAGCGGCAGTTTGCAGGAAAATCAGCCAGCAGCAGACATTCC 232
BSNT_03453___ 305 ------------------AAACACTTTATAATGTGTATCACCAATGCATT 336
|.||.|||.|...|.|.||.||.|||||.|||
BPUM_2053___y 233 CGCAACAAGCCGCACAGCAGACGCTTCACCGTATTTACCATCAATGTATT 282
BSNT_03453___ 337 GAAGAGTTCTTTATGCCGAAAAAAGACACGTGGTGTGAAAATAGCCGGGC 386
||||||||.||.|.|||||||||.||.||.||||.|||..|.|||||..|
BPUM_2053___y 283 GAAGAGTTTTTCACGCCGAAAAAGGATACATGGTATGAGGACAGCCGTTC 332
BSNT_03453___ 387 GTCTTATACCGG---GGTCAGCGCAATTGAGTTTT--ATCATGCTGT-TC 430
..|||||||.|| |..|||| ||| ||||| |.||||..|| ||
BPUM_2053___y 333 CGCTTATACAGGAAAGAACAGC---ATT--GTTTTCCACCATGAAGTATC 377
BSNT_03453___ 431 CTGCGTCGCTTGAG------CAATTATTATTGCCGTT-------GAGCGC 467
||| |||| |.||||||.|...|.|| ||
BPUM_2053___y 378 ------CGC-TGAGATCAAACGATTATTTTCTTCATTAGAAAAAGA---- 416
BSNT_03453___ 468 GGCCTTTCTGA-AGATGAGGGAAGAGCTGGCTCAT-TACGAAGCGTCCGG 515
|||.|.| .||||||.||||||||.| .|| ||||| |.||
BPUM_2053___y 417 ----TTTTTTAGTGATGAGAGAAGAGCTAG--AATATACGA--CATC--- 455
BSNT_03453___ 516 ATCA--AGCATGGCGCCAATCAGATAA-------- 540
||| |||| ||| ||.||
BPUM_2053___y 456 -TCATCAGCA-------AAT--GAAAATGGTATAG 480
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