Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03483 and BPUM_2072

See Amino acid alignment / Visit BSNT_03483 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:00
# Commandline: needle
#    -asequence dna-align/BSNT_03483___spoVAD.1.24716.seq
#    -bsequence dna-align/BPUM_2072___spoVAD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03483___spoVAD-BPUM_2072___spoVAD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03483___spoVAD-BPUM_2072___spoVAD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03483___spoVAD
# 2: BPUM_2072___spoVAD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1036
# Identity:     773/1036 (74.6%)
# Similarity:   773/1036 (74.6%)
# Gaps:          38/1036 ( 3.7%)
# Score: 2709.0
# 
#
#=======================================

BSNT_03483___      1 ATGAAATTAACAGGAAAGCAAACCTGGGTATTTGAACATCCCATATTT--     48
                     .|||||.|||||||.||.|||.|.|||||.|||||.||  |.|..|||  
BPUM_2072___s      1 GTGAAACTAACAGGTAAACAATCTTGGGTGTTTGAGCA--CAAGCTTTAC     48

BSNT_03483___     49 GTCAACTCAGCGGGAACGGCAGCAGGACCAAAGGAAAAAGACGGACCGCT     98
                     |||||..|||.||||||.||.||||||||.||.||||||||.||||||.|
BPUM_2072___s     49 GTCAATGCAGAGGGAACAGCTGCAGGACCGAAAGAAAAAGAAGGACCGAT     98

BSNT_03483___     99 CGGCTC-TTTATTTGATAAAACCTATGACGAAATGCATTGTAATCAAAAA    147
                     .|| || ||||.||||||||||.||.||.||||||||||||.|||||||.
BPUM_2072___s     99 TGG-TCATTTAATTGATAAAACGTACGATGAAATGCATTGTGATCAAAAG    147

BSNT_03483___    148 AGCTGGGAAATGGCGGAACGGCAGCTGATGGAAGACGCTGTTAATGTTGC    197
                     |.||||||||||||.|||.|..|.||.|||||||||||..|  ||...|.
BPUM_2072___s    148 AACTGGGAAATGGCTGAAAGAAAACTCATGGAAGACGCGAT--ATCCAGT    195

BSNT_03483___    198 GCT---TCAAAAAAACAATCTGACAAAAGA-TGATATTGACCTATTGCTG    243
                     |||   ||||||..| |||.|| |||||.| .||||||||.|||||.||.
BPUM_2072___s    196 GCTTTATCAAAAGCA-AATTTG-CAAAAAAGCGATATTGATCTATTACTT    243

BSNT_03483___    244 GCAGGCGACTTGCTGAACCAAAACGTGACGGCTAACTATGTGGCAAGACA    293
                     |||||.||.||.||.||.||||||||.||.||.|||||||||||||||.|
BPUM_2072___s    244 GCAGGAGATTTACTCAATCAAAACGTCACAGCAAACTATGTGGCAAGAGA    293

BSNT_03483___    294 CTTGAAAATCCCATTTCTTTGTATGTTTGGTGCCTGTTCAACATCAATGG    343
                     ..||||||||||.|||||.|||.|||||||.||.||.|||||.|||||||
BPUM_2072___s    294 ACTGAAAATCCCGTTTCTCTGTTTGTTTGGGGCATGCTCAACTTCAATGG    343

BSNT_03483___    344 AAACAGTTGCTGTCGCATCAGC-CTTAGTTGATGGCGGGTTTGCCAAAAG    392
                     ||.|.||.||..|.||.||||| ||.| ||||||||||.||||||||.||
BPUM_2072___s    344 AATCGGTCGCCATTGCGTCAGCACTCA-TTGATGGCGGTTTTGCCAATAG    392

BSNT_03483___    393 GGCACTCGCTGCCACTAGCAGTCACAATGCAACTGCGGAAAGACAGTTTC    442
                     .||..||||.||.||.||||||||.||||||||.||.|||.|.||.||||
BPUM_2072___s    393 AGCCATCGCAGCGACAAGCAGTCATAATGCAACGGCAGAACGCCAATTTC    442

BSNT_03483___    443 GCTATCCGACAGAATACGGAGGCCAAAAACCGGACACTGCTACCTCCACT    492
                     |..||||.|||||||||||.||.||||||||.||.||.||.||....|||
BPUM_2072___s    443 GTAATCCAACAGAATACGGCGGACAAAAACCAGATACAGCCACAAGTACT    492

BSNT_03483___    493 GTAACCGGAAGCGGTGCAGTTGTCATCAGTCAGACACCGGGTGATATCCA    542
                     ||.||.||||||||.||.|||.|.||.||.|||.|.||...|...||.||
BPUM_2072___s    493 GTCACTGGAAGCGGGGCCGTTATTATTAGCCAGGCGCCCTCTCCAATTCA    542

BSNT_03483___    543 AATCACAAGTGCGACTGTCGGAAAGGTTTCTGATTTAGGAATTACAGACC    592
                     |||.|||||.|||||.||.||.|.|||....|||.|.||.||||||||.|
BPUM_2072___s    543 AATTACAAGCGCGACAGTAGGCAGGGTGATGGATCTTGGGATTACAGATC    592

BSNT_03483___    593 CTTTTGATATGGGATCGGCTATGGCTCCGGCTGCAGCTGATACAATTAAG    642
                     |.|||||.|||||||||||.|||||.|||||.||.||.|||||.||.||.
BPUM_2072___s    593 CATTTGACATGGGATCGGCCATGGCACCGGCAGCGGCGGATACCATCAAA    642

BSNT_03483___    643 CAGCACTTTA-AAGATCT--CAACCGGACAGCGGATGATTATGATCTAAT    689
                     ||||| |||| ||||.||  .||  |.||.|.|||.|||||.|||||.||
BPUM_2072___s    643 CAGCA-TTTAGAAGACCTTGGAA--GAACGGTGGACGATTACGATCTGAT    689

BSNT_03483___    690 CCTGACAGGTGACCTGTCAGGCGTCGGTTCTCCAATCGTAAAAGA-CATC    738
                     ..|.|||||.||..|.||.||..|.|||||.|||||..||||.|| |.||
BPUM_2072___s    690 TTTAACAGGAGATTTATCTGGTATTGGTTCGCCAATTTTAAAGGATCTTC    739

BSNT_03483___    739 TTAA--AAGAAGATGGATATCCAGTCGGCACAAAGCATGATGATTGCGGG    786
                     |.||  ||||||  |.|| ||.|.|.||.|.|||||||||||||||||||
BPUM_2072___s    740 TGAAGGAAGAAG--GCAT-TCAACTTGGGAGAAAGCATGATGATTGCGGG    786

BSNT_03483___    787 CTTCTGATTTACACTCCGGATCAGCAGGTCTTTGCCGGGGGGAGCGGCTG    836
                     .|..|.||.||.||.||.|||||..|.||.||.||.||.|||||.|||||
BPUM_2072___s    787 TTAATCATCTATACACCTGATCAAAATGTATTCGCTGGTGGGAGTGGCTG    836

BSNT_03483___    837 TGCTTGTTCAGCGGTTGT--CACCTACTCTCATATTTTTAAGCAGCTGAG    884
                     ||||||||||||.|||||  ||..||.||.||| ||||.||| |..|||.
BPUM_2072___s    837 TGCTTGTTCAGCTGTTGTGACATTTAGTCACAT-TTTTCAAG-AAATGAA    884

BSNT_03483___    885 AGAAGGAAATTT--AAACCGTGTATTTGTCGTAGCGACCGGGGCACTATT    932
                     ||.|||.|||.|  |||  |.|||.|.||.||.||.|||||.||.|||.|
BPUM_2072___s    885 AGCAGGGAATCTGCAAA--GAGTACTCGTTGTGGCAACCGGAGCGCTACT    932

BSNT_03483___    933 AAGCCCGACGATGATCCAGCAAAAAGAAACCATCCCGACTATCGCCCACG    982
                     ||||||.|.||||.|||||||||||||.|||||.||.||.||.||.||||
BPUM_2072___s    933 AAGCCCTATGATGGTCCAGCAAAAAGAGACCATTCCAACCATTGCGCACG    982

BSNT_03483___    983 GGGTTGTATTTGAGCGTGCAGGAGGTG-CATCTTAA   1017
                     |.||.||||||||||||||||||||.| .|.||.| 
BPUM_2072___s    983 GTGTCGTATTTGAGCGTGCAGGAGGAGAGAGCTAA-   1017


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