Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03494 and BPUM_2080

See Amino acid alignment / Visit BSNT_03494 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:01
# Commandline: needle
#    -asequence dna-align/BSNT_03494___punA.1.24716.seq
#    -bsequence dna-align/BPUM_2080___punA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03494___punA-BPUM_2080___punA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03494___punA-BPUM_2080___punA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03494___punA
# 2: BPUM_2080___punA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 857
# Identity:     583/857 (68.0%)
# Similarity:   583/857 (68.0%)
# Gaps:          85/857 ( 9.9%)
# Score: 1873.0
# 
#
#=======================================

BSNT_03494___      1 -TTGAAGGACAGAATT--GAACGCGCAGCCGCTTTTATTAAACAA-----     42
                      |.|.||.||||..||  |||   ||.||.||.|.||||||||||     
BPUM_2080___p      1 GTGGGAGCACAGTTTTCAGAA---GCGGCGGCATATATTAAACAAGCATC     47

BSNT_03494___     43 AACCTGCCGGAATCTCCGAAGA-TCGGCCTTATTTTAGGCTCAGGTCTTG     91
                     |||.|      |..|.|.||.| |.||..|.||.|||||.||||||||||
BPUM_2080___p     48 AACAT------ACGTACCAACAGTTGGATTGATCTTAGGTTCAGGTCTTG     91

BSNT_03494___     92 GCATTTTGGCGGACGAAATCGAAAATCCGGTCAAGCTGAAATATGAAGAT    141
                     ||||.||.||.||.||.||.||||||||..||||..||||||||||||||
BPUM_2080___p     92 GCATATTAGCAGATGAGATTGAAAATCCAATCAAATTGAAATATGAAGAT    141

BSNT_03494___    142 ATACCTGAATTCCCGGTATCTACTGTTGAAGGGCATGCCGGACAGCTTGT    191
                     ||.||||.||||||.||.||.||.||.|||||.|||||.||.|||||.||
BPUM_2080___p    142 ATTCCTGGATTCCCTGTTTCAACAGTAGAAGGTCATGCAGGGCAGCTCGT    191

BSNT_03494___    192 GCTTGGCACTCTTGAAGG-AGTTTCCGTCAT-TGCAATGCAGGGCCGCTT    239
                     ..|.||.||.||..|||| |.|.| ||| || |||||||||.||.||.||
BPUM_2080___p    192 CATCGGGACGCTGAAAGGCACTGT-CGT-ATGTGCAATGCAAGGACGTTT    239

BSNT_03494___    240 TCATTTTTATGAAGGCTACTCA-ATGGAGAAAGTCACATTCCCTGTACGC    288
                     ||||||.||||||||.|| |.| |||.||.||||.||.||.||.||.||.
BPUM_2080___p    240 TCATTTCTATGAAGGTTA-TGATATGAAGCAAGTGACGTTTCCAGTCCGT    288

BSNT_03494___    289 GTGATGAAAGCGCTCGGTGTGGAAGCGTTGATCGTGACAAATGCCGCAGG    338
                     ||||||||||...|.||..|.||..|.|..||.|||||||||||.||.||
BPUM_2080___p    289 GTGATGAAAGAAATTGGCATTGAGACATGTATTGTGACAAATGCAGCCGG    338

BSNT_03494___    339 CGGTGTCAACACTGAATTCCGTGCGGGAGACTTAATGATTATTACCGATC    388
                     ||||||.||.|||..|||||.|.|.||.||..|.|||.|.|||||.||||
BPUM_2080___p    339 CGGTGTAAATACTTCATTCCATCCAGGTGATCTCATGCTGATTACAGATC    388

BSNT_03494___    389 ATATCAACTTTATGGGAACAAACCCGTTAATCGGGCCAAACGAAGCAGAT    438
                     |||||||..|.|||||.||.||.||.|||||.||.|||||.||  |||  
BPUM_2080___p    389 ATATCAATATGATGGGGACCAATCCATTAATTGGACCAAATGA--CAG--    434

BSNT_03494___    439 TTC--GGCGCCAGATTTCCAGATATGTCTTCAGCCTATGACAAAGATCTG    486
                      ||  ||||...|.||.||.|||||||||.|..|.||.||.||||||.||
BPUM_2080___p    435 -TCAAGGCGTTCGTTTCCCTGATATGTCTGCCCCGTACGATAAAGATTTG    483

BSNT_03494___    487 -TCCAGC-CTGGCTGAAAAGATTGCGAAAGACCTTA----------ATAT    524
                      ||  || ||.||.|||        ||||.|.||.|          ||||
BPUM_2080___p    484 CTC--GCACTTGCAGAA--------GAAACAGCTCAGCGCTTAGGCATAT    523

BSNT_03494___    525 CCCAATTCAAAAAGGCGTGTACACTGCTG---TGACAGGACCTTCTTACG    571
                       |..|.||..||||.||.||   |||.|   |||||||.|||||.||.|
BPUM_2080___p    524 --CTGTACAGCAAGGTGTTTA---TGCAGGGATGACAGGTCCTTCATATG    568

BSNT_03494___    572 AAACACCGGCAGAAGTCCGTTTCTTAAGAACGATGGGCTCTGATGCAGTC    621
                     |||||||.||.|||||.||||||.|.|||||..|.|||.|.|||||.||.
BPUM_2080___p    569 AAACACCAGCCGAAGTTCGTTTCCTCAGAACACTTGGCGCAGATGCTGTA    618

BSNT_03494___    622 GGCATGTCTACTGTTCCGGAAGTCATTGTAGCGAATCATGCGGGAATGCG    671
                     ||.|||||.||.|||||.||.||.|||||.|||..||||||.|||||...
BPUM_2080___p    619 GGTATGTCGACGGTTCCAGAGGTGATTGTTGCGCGTCATGCAGGAATCAA    668

BSNT_03494___    672 GGTTCTTGGCATTTCCTGCATCTCTAACGCGGCAGCCGGAATTCTGGATC    721
                     .||.||.||.|||||.|||||.|||||.||||||.|.||.|||.|.||||
BPUM_2080___p    669 AGTGCTAGGTATTTCATGCATTTCTAATGCGGCATCAGGTATTTTAGATC    718

BSNT_03494___    722 AGCCTTTAAGTCACGATGAAGTGATGGAAGTGACCGAAAAAGTAAAAGCT    771
                     ||||..|...|||.||||||||.||.|||||.||.||||||||.||||||
BPUM_2080___p    719 AGCCGCTGTCTCATGATGAAGTCATTGAAGTAACGGAAAAAGTGAAAGCT    768

BSNT_03494___    772 GGATTC----------TTAAAG--CTTGTTAAAGCGATCGTCGCTCAGTA    809
                     .|.|||          |.||||  .||||||||     |..|.|||| ||
BPUM_2080___p    769 AGTTTCCTTGATTTAGTCAAAGACGTTGTTAAA-----CAACTCTCA-TA    812

BSNT_03494___    810 CGAATAA    816
                     .      
BPUM_2080___p    813 G------    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03494 and BPUM_2080

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
