Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03497 and BPUM_2082

See Amino acid alignment / Visit BSNT_03497 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:01
# Commandline: needle
#    -asequence dna-align/BSNT_03497___xerD.1.24716.seq
#    -bsequence dna-align/BPUM_2082___xerD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03497___xerD-BPUM_2082___xerD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03497___xerD-BPUM_2082___xerD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03497___xerD
# 2: BPUM_2082___xerD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 914
# Identity:     653/914 (71.4%)
# Similarity:   653/914 (71.4%)
# Gaps:          46/914 ( 5.0%)
# Score: 2192.0
# 
#
#=======================================

BSNT_03497___      1 GTGAAAGATCAAATAAAGGATTTCATCCACTACGTCATG---GTAGAGAG     47
                     .||||.||||||.||...||.||.||.||.|   |.|||   ||||||||
BPUM_2082___x      1 TTGAACGATCAATTATCCGACTTTATTCATT---TTATGACAGTAGAGAG     47

BSNT_03497___     48 AGGGCTCTCTCAAAATACGATCGTATCCTATGAACGTGACTTGAAAAGCT     97
                     |||.||||||.|||||||.||.||.||.|||.||||.||.||..|.|.||
BPUM_2082___x     48 AGGACTCTCTGAAAATACCATTGTTTCTTATAAACGAGATTTACAGAACT     97

BSNT_03497___     98 A-TTCTCTCTACTTAACAGAAACCCTTCATG------TTACAGATTGGAA    140
                     | ||.|||.|  ||.|..||.|     ||||      |..|||||...||
BPUM_2082___x     98 ACTTGTCTTT--TTTAATGACA-----CATGAGCAGTTGTCAGATATAAA    140

BSNT_03497___    141 TCACGTTACCCGCATACATATTATCCAATACTTAAAGCATTTGAAGGACT    190
                     ..|.||.||.|||.|.|||||.||.||.||.|||||.||..|.||.||..
BPUM_2082___x    141 AGATGTCACGCGCTTGCATATCATTCATTATTTAAAACAGCTAAAAGAGG    190

BSNT_03497___    191 CGGGGAAATCCGGCAAGACATCGGCGCGGCATTTGGCATCCATTCGCTCT    240
                     ..||||||||..|.||.|||||.|..||||||.|..|.||.||.||.||.
BPUM_2082___x    191 AAGGGAAATCAAGTAAAACATCAGTACGGCATCTCTCCTCGATCCGTTCC    240

BSNT_03497___    241 TTTCATCAATTTCTGCTCAGGGAAAAAGTAACGGATAAG--GACCCTTCC    288
                     ||.||.|||||||||||||||||||||||.||  |.|||  ||    |||
BPUM_2082___x    241 TTCCACCAATTTCTGCTCAGGGAAAAAGTGAC--AAAAGATGA----TCC    284

BSNT_03497___    289 GTTCAT-----ATCGAAACACAAAAGACGGAACGGGCGCTTCCGAAGGTG    333
                     | ||||     ||.|||||.|||||.||.||.|||...||.|||||.||.
BPUM_2082___x    285 G-TCATGGAACATAGAAACGCAAAAAACAGAGCGGAAACTACCGAAAGTT    333

BSNT_03497___    334 CTCGCACTCAATGAAGTCGAGCGATTATTGGACACGCCTAAGCTG-ACGA    382
                     ||..||||....||||||||....||..|.||.||.||.||.|.| ||..
BPUM_2082___x    334 CTATCACTAGGGGAAGTCGAAAAGTTGCTTGATACACCAAATCAGCACAC    383

BSNT_03497___    383 GCCCTTTCGGA-TATCGGGATAAAGCAATGCTGGAGCTGCTT-TATGCGA    430
                     |||.|||  || ||.||.||.|||||.|||||.||||| ||| ||.||.|
BPUM_2082___x    384 GCCATTT--GACTACCGTGACAAAGCGATGCTTGAGCT-CTTATACGCAA    430

BSNT_03497___    431 CAGGCATACGAGTCAGTGAAATGATTGAGTTGAAAACGACAGATGTTCAT    480
                     |||||||.||.||||||||||||.|.||..|||.|....|.||||||||.
BPUM_2082___x    431 CAGGCATTCGCGTCAGTGAAATGCTGGACCTGACACTTGCCGATGTTCAC    480

BSNT_03497___    481 TTATCTATGGGGTTTGTCCGATGCTTCGGCAAAGGAAGAAAAGAACGGAT    530
                     .|..|.|||||.|||.||||.||.||.||.|||||||||||||||||.||
BPUM_2082___x    481 CTCACAATGGGCTTTATCCGTTGTTTTGGAAAAGGAAGAAAAGAACGAAT    530

BSNT_03497___    531 TGTGCCAATTGGTGAAGCCGCCGCTTCCGCCATTGAGGAATAT-ATGACA    579
                     ||||||||||||||||||.||.||....||.|||||.|||||| .||| |
BPUM_2082___x    531 TGTGCCAATTGGTGAAGCAGCTGCAAGTGCGATTGAAGAATATCTTGA-A    579

BSNT_03497___    580 AAAGCCAGGGGAAAACTGTTAAAAAATAATGTATCTGACGCCCTCTTTTT    629
                     ||.|..||.||.||.|||||||||||..|.....|.||.|||.|.|||.|
BPUM_2082___x    580 AAGGGAAGAGGCAAGCTGTTAAAAAAACAGCCGGCAGATGCCTTATTTCT    629

BSNT_03497___    630 AAATCATCACGGCAAACAGATCAGCCGC--CAGGGATTTTGGAAGAACCT    677
                     .|||||||||||.|||.|.||  |.|||  ||.||.||.|||||||||||
BPUM_2082___x    630 CAATCATCACGGAAAAAAAAT--GTCGCGGCAAGGTTTCTGGAAGAACCT    677

BSNT_03497___    678 GAAAAAAATCGCGTTGGAAGCCGGCATTAAGAAAGAGCTGACTCCGCATA    727
                     .|||||||..||..|.|||||.||.|||.|.|||||.||.||.||.||||
BPUM_2082___x    678 AAAAAAAAGAGCTCTCGAAGCAGGAATTCAAAAAGAACTCACACCCCATA    727

BSNT_03497___    728 CACTCAGGCATTCCTTTGCGACGCATCTGCTTGAGAACGGGGCAGATTTA    777
                     |||||||||||||.|||||.||.|||||||||||.|||||.|||||..||
BPUM_2082___x    728 CACTCAGGCATTCATTTGCAACACATCTGCTTGAAAACGGTGCAGACCTA    777

BSNT_03497___    778 AGAGCGGTGCAGGAAATGCTCGGTCATGCGGATATATCCACAACGCAAAT    827
                     |||||.||||||||.||||||||.|||||.|||||.||.|||||.|||||
BPUM_2082___x    778 AGAGCTGTGCAGGAGATGCTCGGGCATGCCGATATCTCGACAACACAAAT    827

BSNT_03497___    828 TTATACGCATGTGACGAAAACAAGGCTGAAGGATGTGTACAAGCAGTTTC    877
                     ||||||.||.||||||||||||||..||||.||||||||..|..|.||.|
BPUM_2082___x    828 TTATACACACGTGACGAAAACAAGATTGAAAGATGTGTATCACAAATTCC    877

BSNT_03497___    878 ATCCGCGAGCATAG    891
                     ||||..|.|||||.
BPUM_2082___x    878 ATCCAAGGGCATAA    891


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03497 and BPUM_2082

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
