Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03513 and BPUM_2091
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:02
# Commandline: needle
# -asequence dna-align/BSNT_03513___yqkF.1.24716.seq
# -bsequence dna-align/BPUM_2091___yqkF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03513___yqkF-BPUM_2091___yqkF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03513___yqkF-BPUM_2091___yqkF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03513___yqkF
# 2: BPUM_2091___yqkF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 987
# Identity: 648/987 (65.7%)
# Similarity: 648/987 (65.7%)
# Gaps: 129/987 (13.1%)
# Score: 1989.0
#
#
#=======================================
BSNT_03513___ 1 ATGAGAAAGCG-CAAATTGGGTACATCTGA---TTTAGACATTAGTGAAG 46
.|||.|||..| |.|||| ||||||||.|| |||.| |.||.||||
BPUM_2091___y 1 TTGAAAAAAAGACGAATT-GGTACATCAGATCTTTTGG---TGAGCGAAG 46
BSNT_03513___ 47 TCGGACTC--GGCTGTATGTCTCTTGGAACTGAAAAAAACAAAGCATTGT 94
||| ||| ||.||||||||.||.|||||.||||||...|||||..|.|
BPUM_2091___y 47 -CGG-CTCTAGGATGTATGTCCCTAGGAACAGAAAAAGGAAAAGCGCTCT 94
BSNT_03513___ 95 CCATTCTGGATGAAGCGATCGAGCTCGGCATCAACTATTTGGACACAGCG 144
||.|..|.||||||||.||.||.||.||.||.|||||||||||.|||||.
BPUM_2091___y 95 CCTTATTAGATGAAGCCATTGATCTTGGAATTAACTATTTGGATACAGCC 144
BSNT_03513___ 145 GATTTGTATGA-CCGGGGACGCAACGAAGAAATGGTCGGTGATGCGATCC 193
|||||.||||| ...||||| .||.||.|||||.|||||..|.|||||..
BPUM_2091___y 145 GATTTATATGATTTTGGGAC-AAATGAGGAAATTGTCGGGAAAGCGATTA 193
BSNT_03513___ 194 AAAACAGACGCCAGGATATTATTCTGGCAACAAAAGCGGGAAACCGTTGG 243
||||||||||.||.|||.|.|||.||||.|||||||..||.|||||.|..
BPUM_2091___y 194 AAAACAGACGACAAGATTTAATTTTGGCCACAAAAGGCGGCAACCGCTTT 243
BSNT_03513___ 244 GATGACGG--AAGCGAGGGCTGGTATTGGGACCCTTCAAAAGCTTACATA 291
||..|.|| ||.| .||||||.|.|||||.||||||||.||.||||||
BPUM_2091___y 244 GAAAAAGGCAAATC--TGGCTGGGACTGGGATCCTTCAAAGGCATACATA 291
BSNT_03513___ 292 AAAGAGGCGGTAAAAAAGAGCCTTACACGTCTGAAAACAGATTATATCGA 341
|||||.||.||||||.|.|||||.|..||.|||.|||||||||||||.||
BPUM_2091___y 292 AAAGAAGCTGTAAAACAAAGCCTCAAGCGGCTGCAAACAGATTATATTGA 341
BSNT_03513___ 342 CCTTTAT--CAGCTTCACGGCGGCACGATAGAGGACAACATTGATGAAAC 389
||||| ||..|.|||||.||||||||.||.||....||.|||||.||
BPUM_2091___y 342 --TTTATACCAATTGCACGGAGGCACGATCGATGATCCTATCGATGAGAC 389
BSNT_03513___ 390 GATCGAAGCGTTTGAGGAATTAAAACAAGAAGGTGTCATCCGCTACTACG 439
|||.|||||.|||||.||||||....||||||||||.||.|||||.||.|
BPUM_2091___y 390 GATTGAAGCTTTTGAAGAATTAGTGGAAGAAGGTGTTATTCGCTATTATG 439
BSNT_03513___ 440 GCATTTCTTCCATCCGCCCGAATGTGATTAAAGAATATGTGAAAAAATCA 489
||||.|||||.|||||.|||||.||.|||||||||||.|..||||||||.
BPUM_2091___y 440 GCATCTCTTCTATCCGTCCGAACGTCATTAAAGAATACGCCAAAAAATCG 489
BSNT_03513___ 490 AACATCGTCAGCATTATGATGCAATTCAGCCTGTTT----GACAGACGCC 535
||.||||||||..|.||||||||||..| |||| |||.|.||.|
BPUM_2091___y 490 AATATCGTCAGTGTCATGATGCAATATA----GTTTACTCGACCGCCGTC 535
BSNT_03513___ 536 CTGAGGAATGGCTCCCGCTTTTAGAGGAACATCAAATCAGCGTAGTCGCC 585
|.|||||||||.||.|.|||.|.||.|||||....||.||.||.||.||.
BPUM_2091___y 536 CAGAGGAATGGTTCTCTCTTCTTGAAGAACAAGGCATTAGTGTCGTGGCA 585
BSNT_03513___ 586 AGAGGTCCTGTTGCCAAAGGACTCTTAACTGAAAAACCGCTTGATCAAGC 635
|||||.|||.|.||.|||||.||.|||||.||||||||.||
BPUM_2091___y 586 AGAGGACCTTTAGCAAAAGGGCTTTTAACAGAAAAACCACT--------- 626
BSNT_03513___ 636 TTCAGACAGCA--TGA--------AACAAAACGGGTA-CTTGTC-CTATT 673
|||.|| |||| ||| ||.||||.||.|| || || |||||
BPUM_2091___y 627 TTCGGA-AGCAAGTGACTCGATTCAAAAAAATGGCTATCT--TCACTATT 673
BSNT_03513___ 674 CATTCGAGGAACTGACAAATGCACGCAAGGC-------AATGGAGGAAGT 716
|.||.||.||.|| ||| |||.|..|..| || ||.||||
BPUM_2091___y 674 CTTTTGACGAGCT-ACA---GCAGGTTATTCCTTCTTTAA---AGAAAGT 716
BSNT_03513___ 717 GGCTCCCGATCTTTCCATGACAGAAAAGTCGCTGCAGTATCTGCT--AGC 764
.|||...||.||.||..|.|||||....||..|.||.|||.|||| ||.
BPUM_2091___y 717 CGCTTATGACCTATCACTCACAGAGCTCTCCATTCAATATTTGCTTAAGA 766
BSNT_03513___ 765 ACAGCCGGCTGTCGCTTCAGT-------GATTACAGGCGCCAGTAAGATT 807
| ..||||.| ||||| .||| .|||||.||...|.|.
BPUM_2091___y 767 A-----TTCTGTGG--TCAGTTCTGTTGTATT--TGGCGCAAGCTCGGTG 807
BSNT_03513___ 808 GAGCAGTTACGGGAAAATATTCAGGCA---GCAAATGCACGGCGTTTAAC 854
||.||.|||...||||| |..|||| ||.||||||||...|||||.
BPUM_2091___y 808 GAACAATTAAAAGAAAA---TGCGGCAGCGGCCAATGCACGTTCTTTAAG 854
BSNT_03513___ 855 CGAAGAGGAAATCAAAGCGCTCCAATCTCATACGAAACAAGACATTTACA 904
.||..|.|||.|.|||| ||.|..|.||| |.||||
BPUM_2091___y 855 TGATCAAGAAGTAAAAG-----CATTGACTTAC-----------TATACA 888
BSNT_03513___ 905 AAACTCATC----------GCTCATAG---------- 921
|||| |||| |||||..|
BPUM_2091___y 889 AAAC-CATCTGTGTACGAGGCTCACCGGGTTAAATAA 924
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