Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03517 and BPUM_2095
See
Amino acid alignment /
Visit
BSNT_03517 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:02
# Commandline: needle
# -asequence dna-align/BSNT_03517___yqkD.1.24716.seq
# -bsequence dna-align/BPUM_2095___yqkD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03517___yqkD-BPUM_2095___yqkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03517___yqkD-BPUM_2095___yqkD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03517___yqkD
# 2: BPUM_2095___yqkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1035
# Identity: 599/1035 (57.9%)
# Similarity: 599/1035 (57.9%)
# Gaps: 219/1035 (21.2%)
# Score: 1449.0
#
#
#=======================================
BSNT_03517___ 1 TTGAAGAAA---ATCCTTTTGGCCAT--TGGCGCTCTCGTAACAGCTG-- 43
.||||.||| ||| ||.|| |.|| || ||.||..| ||
BPUM_2095___y 1 ATGAAAAAATGGATC------GCTATACTTGC-CT-TCATATTA--TGTC 40
BSNT_03517___ 44 ---TCATCGCAATCGGAATTGTTTTTTCA-----AATATGAT-TCTATTC 84
||||.||||||||.|| |||||||| ||.||||| |.|||||
BPUM_2095___y 41 CGCTCATTGCAATCGGCAT--TTTTTTCACCAATAAAATGATGTATATTC 88
BSNT_03517___ 85 ATCAAGAAAA-AAACGGATGAAGACATTATCAAAAGAGAGACAGACAACG 133
||||| .|||.||||||||..|.||||||.|.||..||||..|.|
BPUM_2095___y 89 -----GAAAATTAACAGATGAAGAGCTCATCAAACGGGAATCAGATGAAG 133
BSNT_03517___ 134 G---------ACATGATGTGTTTGAATCATTTGAGC---AAATGGAGAAA 171
| .|||||.|.||||.|| .||| |||..||||||
BPUM_2095___y 134 GGCATTATCATCATGAAGAGTTTCAA------CAGCTTAAAAAAGAGAAA 177
BSNT_03517___ 172 ACCGCTTTTGTG-ATACCCTCCGCTTACGGGTATGA----CATAAAAGGA 216
.|||| ||.||.||.||.|..||.||||| ||| ||.
BPUM_2095___y 178 -------GTGTGTATTCCTTCAGCATTTGGTTATGATCTTCAT----GGC 216
BSNT_03517___ 217 TACCATGT--CGCAC-CGCATGACACACCAAACACTATCATCA------T 257
||...||| ||||| |.||| |||||...||||| .||.|| |
BPUM_2095___y 217 TATTTTGTGCCGCACTCACAT-ACACATACAACAC--GCACCATTGTACT 263
BSNT_03517___ 258 CTGCCACGGGGTGACGATGAATGTGCTGAATTCTCTTAAGTATATGCATT 307
.||.||.||.||.||..|.|.|.|..|.|||||..|||||||||||...|
BPUM_2095___y 264 TTGTCATGGCGTCACAGTCAGTTTAATCAATTCCGTTAAGTATATGAGAT 313
BSNT_03517___ 308 TATTTCTTGATCTCGGCTGGAATGTGCTCATTTATGACCACCGCCGGCAT 357
||||.|...|.|||||.|||||||||.|..|||||||.||..|..|.|||
BPUM_2095___y 314 TATTCCAAAAGCTCGGGTGGAATGTGATGCTTTATGATCATAGAAGACAT 363
BSNT_03517___ 358 GGCCAA--AGCGGCGGAAAGACGACCAGCTACGGATTTTACGAAAAGGAT 405
|| || |||||||||||.||.||.||.||.||.|..||||||||.||.
BPUM_2095___y 364 GG--AATGAGCGGCGGAAAAACCACGAGTTATGGGTACTACGAAAAAGAA 411
BSNT_03517___ 406 GATCTCAATA----AGGTTGTCAGCTGGCTCAAAAACAAA-AC------- 443
||| .|| ||||.||.|..|||||| |.||||| ||
BPUM_2095___y 412 GAT----TTAGCGCAGGTCGTGAAGTGGCTC--AGACAAAGACTCGGGGA 455
BSNT_03517___ 444 AAATCATTGCGGATTGATCGGAATTCACGGTGAGTCGATGGGAGCTGTGA 493
||||..| ||| |||||.||.|||||.||.||.|||||.||.||.|
BPUM_2095___y 456 AAATGCT-----ATT-ATCGGTATACACGGAGAATCAATGGGGGCAGTCA 499
BSNT_03517___ 494 CCGCCCTGCTTTACGCTGGTGCACA--CTGCAGCGATGGCGCTGATTTTT 541
|..|..||.|.|| ||.||||.| |.|.|||.| ||||..||||||
BPUM_2095___y 500 CGACTTTGTTATA---TGCTGCAAAGCCGGAAGCAA--GCGCCAATTTTT 544
BSNT_03517___ 542 ATATTGCCGATTGTCCGTTCGCATGTTTTGATGAGCAGCTTGCCTACCGG 591
|.||.||.||.|||||.||.||.|.||||||.||.||||||..|||.|
BPUM_2095___y 545 ACATCGCTGACTGTCCTTTTGCTTCTTTTGAGGATCAGCTTCTCTATC-- 592
BSNT_03517___ 592 CTGAGAGCGGATT----ACAGGCTCCCGTCT----------TGGCCCCTG 627
|||| ||||..|..||||| |||...||
BPUM_2095___y 593 ---------GATTAAAAACAGATTTTCGTCTTTCAGGGAGATGGATTCT- 632
BSNT_03517___ 628 CTCC-CT-----ATCGCCGACTTCTTTTTGAA---GC-TGAGGGGCGGCT 667
||| || |||| |.|.||.|| || |||.||
BPUM_2095___y 633 -TCCACTAAGTGATCG-------CGTGTTAAAATGGCGTGATGG------ 668
BSNT_03517___ 668 ATCGCGCA--CGTGAAGTATCTCCGCTTGCTGTCATTGATAAAATCGA-A 714
||...||| ||..||||.||.|||||||.|||.||.|||.|..| || |
BPUM_2095___y 669 ATACAGCATTCGGCAAGTGTCACCGCTTGATGTGATCGATCAGGT-GAGA 717
BSNT_03517___ 715 AAGCCGATCCTCTTTATTCACAGTAAGGATGATGACTACATTCC-TGTTT 763
.|.||..|.||.|||||.||.||.....|.||||||||.||||| ||
BPUM_2095___y 718 GAACCTGTACTTTTTATCCATAGCCTTCACGATGACTATATTCCATG--- 764
BSNT_03517___ 764 CTTCAACCG---------AGCGGCTTTAT----GAAAAGAAACGCGGGCC 800
|| |||.|||.||| |||||.|| ||..
BPUM_2095___y 765 -------CGAGCAGAGTCAGCAGCTATATACTCGAAAAAAA-----GGTG 802
BSNT_03517___ 801 GAAAGC-GCTGTACATTGCCGAGAACGGTGAACACGCCATGTCATATACC 849
.|||.| .||.|..||.||...|.||||.|..||.||.|||||.|.||.|
BPUM_2095___y 803 AAAAACAACTATTTATAGCGCCGCACGGGGCTCATGCGATGTCTTTTAGC 852
BSNT_03517___ 850 AAAAATCGGGATACGTACCGAA-AAACAGTGCAGGAGTTTTTAGACAAC- 897
.|||||...||..|.|| .||| ||..|||.|| ||..||...|||||
BPUM_2095___y 853 GAAAATAAAGAAGCTTA-TGAACAAGAAGTTCA--AGCATTCCTACAACC 899
BSNT_03517___ 898 -----------ATGAATGATTCAACAGAATAA--- 918
||||| |||..||.||.|.||
BPUM_2095___y 900 ATTTGATTTGAATGAA-GATAAAAGAGGAGAATGA 933
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.