Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03540 and BPUM_2111
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:04
# Commandline: needle
# -asequence dna-align/BSNT_03540___yqjN.1.24716.seq
# -bsequence dna-align/BPUM_2111___yqjN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03540___yqjN-BPUM_2111___yqjN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03540___yqjN-BPUM_2111___yqjN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03540___yqjN
# 2: BPUM_2111___yqjN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1744
# Identity: 1147/1744 (65.8%)
# Similarity: 1147/1744 (65.8%)
# Gaps: 230/1744 (13.2%)
# Score: 3468.0
#
#
#=======================================
BSNT_03540___ 1 ATGAATTGGCAGACGAA----GGACGAATTGCTGGCACTTTTAACTTCTC 46
|||||.|||||.||..| |.||||| .||.|||..|.||..|||
BPUM_2111___y 1 ATGAAATGGCAAACAGAGAGTGAACGAA----AGGAACTGCTCACAGCTC 46
BSNT_03540___ 47 TTGTGCAATACGAAAGCATCACCGGTTCAAAGGGCGAGGCAGCACTTGCA 96
||.||||.||.||||||||..|.|||.|||..||.||.|..||..|.||.
BPUM_2111___y 47 TTATGCAGTATGAAAGCATATCGGGTACAACTGGAGAAGTGGCGTTAGCT 96
BSNT_03540___ 97 GAGTATCTTTATTTTATT--TTGAAGGACAAGCCCTATTTTCAAAATC-- 142
|| ||.|||||.||||| ||||.|||...|||.|||| |.||.|
BPUM_2111___y 97 GA--ATATTTATATTATTTATTGAGGGAGCGGCCTTATT---ACAAGCAG 141
BSNT_03540___ 143 -ACCCTGATGATGTAACACTTCATCCGATGGACGATGGCAGATCTTTTCT 191
||||||||.||.|..|..|.|||||||||.|.||||||.|||.||.|.|
BPUM_2111___y 142 AACCCTGATCATTTGGCTTTGCATCCGATGAAAGATGGCCGATATTATTT 191
BSNT_03540___ 192 TACGGCTCTAGTCAAAAAGAAGAAT----------GTCAAAAAGACAGTG 231
.|||||.||.|| ||||...|.| || ||.||.
BPUM_2111___y 192 AACGGCGCTTGT---AAAGCGTAGTTCTCTTTCTCGT-------ACCGTT 231
BSNT_03540___ 232 CTTCTGCTGAGTCATTTTGATGTCGTTGACATAGAAGATTACGGCGAATT 281
.|.|||||.||||||||.||||||||.||.|.||||||||||||.|||||
BPUM_2111___y 232 TTGCTGCTTAGTCATTTCGATGTCGTCGATACAGAAGATTACGGTGAATT 281
BSNT_03540___ 282 TAAACATATGGCTTGCAAGCCTGCTGAGCTTTTGAGC-TCCTTTTTAGAG 330
|.||.|.|||||.||||||||.|..|||.|..|| || ||.||||...|.
BPUM_2111___y 282 TCAAAACATGGCATGCAAGCCAGAGGAGTTAATG-GCGTCATTTTCTCAA 330
BSNT_03540___ 331 AAAAAAGAGCTGCTCCCGGAACGGG--TGAGAAGAGATGCCGAAAGC--- 375
||||..|.|||.|||||..||.|.| .|.|||||..| |||
BPUM_2111___y 331 AAAAGTGCGCTTCTCCCAAAAAGAGCAAGGGAAGATCT------AGCTTC 374
BSNT_03540___ 376 -GGAGACTGGCTGTTCGGAAGAGGGACGATGGATATGAAAGCGGGGCTTT 424
||.||||||.||||.||||||||..|.|||||||||||.||.||.|||.
BPUM_2111___y 375 AGGTGACTGGTTGTTTGGAAGAGGTGCCATGGATATGAAGGCAGGTCTTA 424
BSNT_03540___ 425 GTGTTCAACTGTCGATGCTGGAGAGGGCAAT-GAACGGACATTTTGAGGG 473
.|||.||.|||||.||||||||.||.||.|| |.|..|||| |||||.||
BPUM_2111___y 425 CTGTACAGCTGTCTATGCTGGAAAGAGCGATGGCAGAGACA-TTTGATGG 473
BSNT_03540___ 474 CAATCTGCT-GTTGATAACGGTTCCGGACGAGGAAGTGAATTCAAGAGGC 522
.|||.|.|| .||| |.||.||.||.||.||.|||||||||||...|||.
BPUM_2111___y 474 AAATGTCCTACTTG-TCACAGTCCCAGATGAAGAAGTGAATTCTCAAGGG 522
BSNT_03540___ 523 ATGATTGAAGCGGTTCCTGCATTGAAGGA----AATGGAGAAAAAGCATG 568
|||.|||||||.|||||...|.|.||||| ||.| |||||||..
BPUM_2111___y 523 ATGCTTGAAGCTGTTCCAAAACTAAAGGAGCTTAAAG----AAAAGCACA 568
BSNT_03540___ 569 ATATCACATTA-ACTGCTTGCCTGAATGCCGAACCGATGTTTGAAAAATT 617
||.| ..|||| ||.||.|||.|.||....||.||.|||||||||||||.
BPUM_2111___y 569 ATCT-TGATTATACCGCATGCTTAAACAGTGAGCCTATGTTTGAAAAATA 617
BSNT_03540___ 618 TCCCGGCGATCAGCAGCAATATTTTTATACTGGAAGCATTGGCAAGGTGC 667
|||.||.|||.|.||..|.|||.|.|||||.||.||.||.||.|||||||
BPUM_2111___y 618 TCCTGGTGATGAACATTATTATATGTATACAGGCAGTATAGGGAAGGTGC 667
BSNT_03540___ 668 TTGCGGGTTTTTTCTGCAAGGGGATTGAGACACATGTTGGAGAGCCGTTT 717
|.||.||.|||||||||||.||.|||||.||||||||.|||||||||||.
BPUM_2111___y 668 TGGCCGGGTTTTTCTGCAAAGGAATTGAAACACATGTAGGAGAGCCGTTC 717
BSNT_03540___ 718 TCAGGCCTAAACGCAAATTTAATGGTATCTGAGATT-AACCGTTTGCTTG 766
||||||.||||.||.|||||.|||||.||||| ||| ||.||..||.|.|
BPUM_2111___y 718 TCAGGCTTAAATGCGAATTTTATGGTGTCTGA-ATTAAATCGGCTGTTAG 766
BSNT_03540___ 767 AACTGAATGCTGATTATTGCGAAAAGGTTGATGGCGAGGTCACTCCGCCG 816
|.||||||..||||||.||.||..|.||.||.||.||.|||||.||.||.
BPUM_2111___y 767 AGCTGAATAGTGATTACTGTGAGGAAGTAGACGGTGAAGTCACGCCACCT 816
BSNT_03540___ 817 CCGGTAAAC----TTAATGCAAAAGGACTTGAAAGAGGCATATTCAGTCC 862
|| ||| ||||||||||||||.||.|||||.||.|||||.||.|
BPUM_2111___y 817 CC----AACCAATTTAATGCAAAAGGATTTAAAAGAAGCCTATTCCGTTC 862
BSNT_03540___ 863 AGACACCGCATACAGCTGTCACATTATTTAATGTGCTGTCAATGAAACGC 912
|.|||||.||.||.|||||..|.|||||||||||||||...|||||.||.
BPUM_2111___y 863 AAACACCTCACACCGCTGTTTCTTTATTTAATGTGCTGATGATGAATCGT 912
BSNT_03540___ 913 TCAGCTAGT---GAGCTGCATCAGATGCTGCT---TAAAACAGCAGAACA 956
||| ||| ||.||||| |.| |||.|| |.|.|||||..||||
BPUM_2111___y 913 TCA---AGTGAAGAACTGCA-CGG--GCTTCTTTATGACACAGCGAAACA 956
BSNT_03540___ 957 GGCGGCGGAGGAAATC-------ATGTCGAACGTTCGGAAGAAAACACAG 999
.||.||.||..||||| |..||.||| ||||.||||
BPUM_2111___y 957 AGCAGCAGACCAAATCGAAGCTGACCTCAAAC---------AAAAAACAG 997
BSNT_03540___ 1000 --GATTTTCAACAATTTGAGCCATTT-CAGCCGATTG--AGCGGGACGTC 1044
||.|||||.|..|||.|.||.||| || ||||||| |...||| |.
BPUM_2111___y 998 CAGAATTTCAGCGCTTTAAACCTTTTACA-CCGATTGATACAAGGA--TT 1044
BSNT_03540___ 1045 ACTGTTTTGACATTTGATGAGCTGGTCTCGCGTGCAAAAAAGCGTGCGG- 1093
||.|||.|.||.|.|.|.||||| ||.|| ||||||| |||.|
BPUM_2111___y 1045 ACCGTTCTCACGTATCAAGAGCT-GTATC-------AAAAAGC-TGCTGA 1085
BSNT_03540___ 1094 -GGATCTCGGAAACAGAGCGG------GC--TCTAAATTATGCCTTTGCT 1134
.|.||..|.||||| ||.|| || |.|.||.|||||.|||||.
BPUM_2111___y 1086 ACGCTCAGGTAAACA-AGAGGTTGAACGCATTGTGAACTATGCGTTTGCC 1134
BSNT_03540___ 1135 AACAGGGGGGAGCTTGGAGACAGGGATTTTTCGACGAAAATTGTTTCTGA 1184
||..|.||.|||||||||||..|.||||||||.||.|||||.||||||||
BPUM_2111___y 1135 AATCGAGGTGAGCTTGGAGATCGTGATTTTTCAACCAAAATCGTTTCTGA 1184
BSNT_03540___ 1185 GCTTGCTTCGCTTTGTAAGGAGGATGCGCCGCTCATCGTTCTGTTTTATA 1234
|||..|..|||||||||||||.||.|.|||.||.||.|||||.|||||||
BPUM_2111___y 1185 GCTAACGACGCTTTGTAAGGAAGAAGGGCCACTTATTGTTCTATTTTATA 1234
BSNT_03540___ 1235 GTCCGCCGCTTTATCCAGCTGTTTCTTCAAAGGATGATCAATTGATCAGA 1284
|||||||..||||||||||.|||||.||||.|||.|||
BPUM_2111___y 1235 GTCCGCCATTTTATCCAGCAGTTTCCTCAACGGAAGAT------------ 1272
BSNT_03540___ 1285 AATACAGCAGATC--AG-----TTAA--AGCATT---AT-GCGGC---TG 1318
|.|||.||| || |||| ||.||| || |.||| ..
BPUM_2111___y 1273 ----CCGCATATCCAAGCAACCTTAAAGAGGATTCAAATAGAGGCAAAGA 1318
BSNT_03540___ 1319 AGCGATACGGCATTGCATTACGGGAAGTTCAGTACTTCCCTGGACTTTCG 1368
||.|.||.||..|||.|.||...|||||..|.||.||.||.|||.|.|||
BPUM_2111___y 1319 AGAGTTATGGACTTGAAATAGAAGAAGTGAAATATTTTCCGGGATTGTCG 1368
BSNT_03540___ 1369 GACTTGAGTTATCTTCAGCTGGAAAAGCAGGAGGTTGATGCA-TACACAA 1417
||.|||||||||.|.|||||.|||||.|||||.||.| .||| ||.||.|
BPUM_2111___y 1369 GATTTGAGTTATTTACAGCTCGAAAAACAGGACGTAG-GGCATTATACGA 1417
BSNT_03540___ 1418 GCAATATGCCGCTCTTTAACAG--AGGATATTCATTGCC--AAGCGGTAA 1463
.|||||||||| |||||.||| |||.|||||.||.|| ||| |..||
BPUM_2111___y 1418 CCAATATGCCG--CTTTACCAGAAAGGCTATTCTTTACCGGAAG-GAGAA 1464
BSNT_03540___ 1464 AA---ATCAGGCTTTATATGTCCCGGTTTTAAATGTCGGTCCGGCTGGTA 1510
|| |.|| ||| ||.||.||.||..|.||.||.|||||....||.|
BPUM_2111___y 1465 AAGGGAGCA--CTT--TACGTTCCAGTCATCAACGTGGGTCCATTAGGAA 1510
BSNT_03540___ 1511 AAGACCCGCATAAATGGACGGAAAGATTGTATATGCCTTATTCCTTTGAA 1560
|.||||||||.|||||||||||..|..||.|.||.||.|..||.||.|
BPUM_2111___y 1511 AGGACCCGCACAAATGGACGGAGCGCCTGCACATTCCGTTCTCATTCG-- 1558
BSNT_03540___ 1561 GTGCTTCCCGATTTGCTTTCATTTACGATCTCCGCGCTATTAAAGCAATC 1610
||.| ||||| || || |||| |
BPUM_2111___y 1559 --GCAT-----TTTGC---CA-----GA----------ATTA-------C 1576
BSNT_03540___ 1611 -AGAATCTGCCGGCCAGCTGC-TGC-------GGGAAAAA-TAA 1644
||||||.|| |.|.| ||| |.|||||| |||
BPUM_2111___y 1577 TAGAATCAGC------GATTCATGCTTTGTTAGAGAAAAAGTAA 1614
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