Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03550 and BPUM_2124
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_03550___yqjI.1.24716.seq
# -bsequence dna-align/BPUM_2124___yqjI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03550___yqjI-BPUM_2124___yqjI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03550___yqjI-BPUM_2124___yqjI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03550___yqjI
# 2: BPUM_2124___yqjI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1426
# Identity: 1119/1426 (78.5%)
# Similarity: 1119/1426 (78.5%)
# Gaps: 32/1426 ( 2.2%)
# Score: 4336.5
#
#
#=======================================
BSNT_03550___ 1 ATGTCAAAACAACAAATCGGCGTTATCGGACTTGCGGTCATGGGTAAAAA 50
||||||||||||||||||||.||..|.|||||.||.||.|||||||||||
BPUM_2124___y 1 ATGTCAAAACAACAAATCGGTGTGGTTGGACTAGCCGTTATGGGTAAAAA 50
BSNT_03550___ 51 TCTGGCTTTAAATATCGAAAGCCGGGGATTTTCTGTTTCTGTCTACAACA 100
.||.||..|.|||||.||||||||.||.||.||.||.||.||.||.||||
BPUM_2124___y 51 CCTTGCCCTTAATATTGAAAGCCGCGGGTTCTCCGTGTCCGTTTATAACA 100
BSNT_03550___ 101 GATCAAGCAGTAAAACTGAGAAGTTTTTACAGGAGGCAAAAGGAAAAAAT 150
||||.|||||.|||||.||..|||||.|..|.||..||||.||.||||||
BPUM_2124___y 101 GATCTAGCAGCAAAACAGAAGAGTTTCTCGAAGAATCAAATGGGAAAAAT 150
BSNT_03550___ 151 GTTGTTGGCACATACAGCATTGAAGAATTTGTCCAATC-CTTGGAAACAC 199
|||||.||||||||.|||||.|||||||||||.||.|| ||| |||||||
BPUM_2124___y 151 GTTGTAGGCACATATAGCATCGAAGAATTTGTTCAGTCGCTT-GAAACAC 199
BSNT_03550___ 200 CGCGCAAAA-TCTTATTAATGGTTAAAGCGGGAACTGCAACAGATGCGAC 248
||||.|||| |||| ||||||||.|||||.||..|.|||||.|||||.||
BPUM_2124___y 200 CGCGTAAAATTCTT-TTAATGGTAAAAGCTGGTGCAGCAACGGATGCAAC 248
BSNT_03550___ 249 AATTCAATCTCTTCTTCCTCATCTAGAGAAGGATGATATTTTAATTGACG 298
.||||||||..|.||||||||.||||||||.|.|||.||.||||||||.|
BPUM_2124___y 249 CATTCAATCATTACTTCCTCACCTAGAGAAAGGTGACATCTTAATTGATG 298
BSNT_03550___ 299 GCGGTAATACATACTATAAAGATACACAGCGCCGTAACAAAGAACTCGCT 348
|.||.||||||||.||.||.|||||.||..|.|||||..||||.||.||.
BPUM_2124___y 299 GTGGAAATACATATTACAAGGATACGCAAAGACGTAATCAAGAGCTTGCG 348
BSNT_03550___ 349 GAAAGCGGCATTCATTTTATCGGAACAGGTGTTTCCGGCGGAGAAGAAGG 398
|||||.||.|||||.||.||.||.|||||||||||||||||.||||||||
BPUM_2124___y 349 GAAAGTGGTATTCACTTCATTGGTACAGGTGTTTCCGGCGGTGAAGAAGG 398
BSNT_03550___ 399 GGCACTTAAAGGGCCTTCTATTATGCCTGGCGGACAAAAAGAAGCACATG 448
.|||||.|||||.||.||.||.|||||.|||||.|||||||||||.||||
BPUM_2124___y 399 TGCACTAAAAGGTCCATCGATCATGCCAGGCGGTCAAAAAGAAGCGCATG 448
BSNT_03550___ 449 AGCTTGTAAAACCGATTCTTGAAGCCATTTCTGCAAAAGTTGACGGAGAA 498
||||.||.|||||.|||||.|||||.||||||||.|||||.||.||.||.
BPUM_2124___y 449 AGCTAGTGAAACCAATTCTAGAAGCGATTTCTGCGAAAGTAGATGGCGAG 498
BSNT_03550___ 499 CCTTGTACGACATATATCGGTCCGGACGGCGCCGGCCATTACGTAAAAAT 548
||.|||||.||.||||||||.||.||.||.||.||.|||||.||.|||||
BPUM_2124___y 499 CCATGTACAACGTATATCGGCCCAGATGGAGCAGGACATTATGTCAAAAT 548
BSNT_03550___ 549 GGTGCACAACGGAATTGAATACGGAGATATGCAGCTGATCTCTGAATCAT 598
|||.||.|||||.||.||.||||||||.|||||..||||.||||||||||
BPUM_2124___y 549 GGTCCATAACGGCATCGAGTACGGAGACATGCAATTGATTTCTGAATCAT 598
BSNT_03550___ 599 ATTTCATTCTGAAACAGGTGCTGGGCCTTTCTGCTGATGAGCTTCATGAA 648
|.||.||..||||.||.|||...||..|.||.||.||.||||||||||||
BPUM_2124___y 599 ACTTTATCTTGAAGCATGTGGCAGGATTGTCAGCAGAGGAGCTTCATGAA 648
BSNT_03550___ 649 GTTTTCGCTGAATGGAATAAAGGTGAGCTTGATAGCTACCTGATTGAGAT 698
||.|||.|.||||||||||||||.||||||||.|||||..|.|||||.||
BPUM_2124___y 649 GTATTCTCAGAATGGAATAAAGGCGAGCTTGACAGCTATTTAATTGAAAT 698
BSNT_03550___ 699 TACGGCTGACATCTTCACAAAAAAAGACGAAGAGACAGGCAAGCCGCTTG 748
|||.|||||.||.|||||||||...||.|||||.|||....|||||||||
BPUM_2124___y 699 TACAGCTGATATTTTCACAAAAGTGGATGAAGAAACAAATCAGCCGCTTG 748
BSNT_03550___ 749 TTGATGTGATTCTT-GATAAAGCAGGGCAAAAAGGAACAGGAAAATGGAC 797
|.||||||| |||| ||||||||.||.|||||||||||.|||||||||||
BPUM_2124___y 749 TGGATGTGA-TCTTAGATAAAGCTGGACAAAAAGGAACTGGAAAATGGAC 797
BSNT_03550___ 798 AAGCCAAAGCGCACTTGACTTAGGCGTTCCGCTTCCGATTATTACTGAAT 847
.||||||||..|.|||||..||||.|||||||||||.||.||||||||.|
BPUM_2124___y 798 GAGCCAAAGTTCTCTTGATCTAGGTGTTCCGCTTCCAATCATTACTGAGT 847
BSNT_03550___ 848 CTGTATTCGCACGCTTTATCTCAGCTATGAAGGAAGAGCGTGTGAAAGCG 897
||||.|||||.||||..||.|||||.|||||.||.||||||||..||||.
BPUM_2124___y 848 CTGTTTTCGCGCGCTACATTTCAGCAATGAAAGATGAGCGTGTTGAAGCA 897
BSNT_03550___ 898 AGCGGACTTC--TT--TC--AGGACCAGAAGTGAAGCCTG-----TTA-C 935
|| || || || |||.|| .|||||.| |.| |
BPUM_2124___y 898 AG------TCAATTAATCGAAGGTCC------TAAGCCAGCGCAATCAGC 935
BSNT_03550___ 936 AGAAAATAAAGAAGAGCTGATTGAAGCGGTCAGAAAAGCGTTGTTCATGA 985
|||.||||||.||||||||||.||||||||.||||||||..|.|||||||
BPUM_2124___y 936 AGAGAATAAACAAGAGCTGATCGAAGCGGTTAGAAAAGCCCTATTCATGA 985
BSNT_03550___ 986 GTAAAATCTGTTCATACGCGCAAGGATTTGCCCAAATGAAAGCTGCTTCT 1035
||||||||||||||||.||.|||||.|||||.|||||||||||.||.|||
BPUM_2124___y 986 GTAAAATCTGTTCATATGCACAAGGTTTTGCGCAAATGAAAGCAGCATCT 1035
BSNT_03550___ 1036 GAAGAATACAACTGGGATCTGAAATATGGTGAAATCGCTATGATCTTCCG 1085
||.||.||.|||||||||.|.|||||.||||||||.||.|||||||||||
BPUM_2124___y 1036 GATGAGTATAACTGGGATTTAAAATACGGTGAAATTGCAATGATCTTCCG 1085
BSNT_03550___ 1086 CGGTGGTTGCATCATTCGCGCGGCATTCCTTCAGAAGATCAAAGAAGCTT 1135
.|||||.||.||||||||.||.||.|||.|.||..|.||.||||||||.|
BPUM_2124___y 1086 TGGTGGATGTATCATTCGTGCAGCCTTCTTGCAACAAATTAAAGAAGCAT 1135
BSNT_03550___ 1136 ACGATCGCGAGCCTGAGCTTGACAACCTGCTT-CTTGACAGCTATTTCAA 1184
|.||.||..|.||.||.| |||.||.||..|| |||||....||.||.||
BPUM_2124___y 1136 ATGACCGTAACCCAGAAC-TGAAAAACTTATTGCTTGATCCTTACTTTAA 1184
BSNT_03550___ 1185 GAATATTGTAGAAAGCTATCAAGGAGCGCTTCGCCAAGTGATTTCACTTG 1234
|.||||||...|||||||||||..|.|.|||||..||||.||||||||||
BPUM_2124___y 1185 GGATATTGCTCAAAGCTATCAATCATCTCTTCGTAAAGTCATTTCACTTG 1234
BSNT_03550___ 1235 CAGTTGCCCAAGGTGTGCCGGTGCCATCATTCTCAAGCGCATTAGCCTAC 1284
||||.|..|||||.||.||.||.||.|||||||||||.|||.|.||.|||
BPUM_2124___y 1235 CAGTGGAGCAAGGAGTTCCTGTTCCTTCATTCTCAAGTGCACTTGCTTAC 1284
BSNT_03550___ 1285 TATGACAGCTACCGCACAGCCGTACTGCCTGCAAACTTAATCCAAGCACA 1334
|.|||.|||||.||||||||.||.|||||.||.||||||||.||||||||
BPUM_2124___y 1285 TTTGATAGCTATCGCACAGCTGTCCTGCCAGCGAACTTAATTCAAGCACA 1334
BSNT_03550___ 1335 GCGCGACTACTTTGGCGCTCATACGTATGAGCGTACTGACAAAGAAGGCA 1384
|||.|||||.||.||.||.|||||||||||.||.||.||.||||||||||
BPUM_2124___y 1335 GCGTGACTATTTCGGTGCACATACGTATGAACGCACAGATAAAGAAGGCA 1384
BSNT_03550___ 1385 TCTTCCATACTGAATGGATGAAGTAA 1410
||||||||||.|||||||||||.|||
BPUM_2124___y 1385 TCTTCCATACAGAATGGATGAAATAA 1410
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