Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03551 and BPUM_2125

See Amino acid alignment / Visit BSNT_03551 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:05
# Commandline: needle
#    -asequence dna-align/BSNT_03551___yqjH.1.24716.seq
#    -bsequence dna-align/BPUM_2125___polY1.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03551___yqjH-BPUM_2125___polY1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03551___yqjH-BPUM_2125___polY1.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03551___yqjH
# 2: BPUM_2125___polY1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1302
# Identity:     890/1302 (68.4%)
# Similarity:   890/1302 (68.4%)
# Gaps:         114/1302 ( 8.8%)
# Score: 2737.5
# 
#
#=======================================

BSNT_03551___      1 ATGCC---GGGAAAGAGCCGAATTATTTTCCATATTGATATGAATAGC-T     46
                     |||||   |..|||      .||||||||.|||||.||.|||||| || |
BPUM_2125___p      1 ATGCCAATGTCAAA------TATTATTTTTCATATAGACATGAAT-GCGT     43

BSNT_03551___     47 TTTATGCGTCGGTTGAAATGGCATATGATCCGGCTCTCCG-GGGAAAGCC     95
                     |||||||....||.||||||||.||||||||..||.|..| |||||| ||
BPUM_2125___p     44 TTTATGCCAATGTAGAAATGGCGTATGATCCTTCTTTGAGAGGGAAA-CC     92

BSNT_03551___     96 GGTCGCAGTTGCCGGAAACGTAAAAGAGCG-AAAGGGCATTGTGGTAACA    144
                     ..|.||..||..||||||.|..|||||||| |||||| ||||||||.||.
BPUM_2125___p     93 TTTAGCCATTAGCGGAAATGCGAAAGAGCGTAAAGGG-ATTGTGGTGACG    141

BSNT_03551___    145 TGCAGCTATGAAGCAAGAGCGCGCGGCGTCAAAACAACGATGCCGGTTTG    194
                     |||||||||||.||||||||||..||.||.||..|..|||||||..|.||
BPUM_2125___p    142 TGCAGCTATGAGGCAAGAGCGCTAGGTGTAAAGCCTCCGATGCCTTTATG    191

BSNT_03551___    195 GCAAGCGAAGCGCCATTGTCCTGAGCTCATCGTTCTTCCGCCGAACTTTG    244
                     |.||||||||||.|.||||||.|.|||.||.||.|.|.|.||.||.||||
BPUM_2125___p    192 GGAAGCGAAGCGGCTTTGTCCGGGGCTGATTGTCCGTACACCAAATTTTG    241

BSNT_03551___    245 ACCGCTATAGAAACTCTTCACGAGCGATGTTTACCATTCTTCGTGAATAT    294
                     ||||.||..|||.|||.||||.||.|||||||||.||.||..|.|||||.
BPUM_2125___p    242 ACCGGTACCGAAGCTCCTCACAAGAGATGTTTACGATACTAAGAGAATAC    291

BSNT_03551___    295 ACTGACCTGGTGGAGCCTGTCTCTATCGACGAAGGCTATATGGACATGAC    344
                     |..||..|.||.||.||.||.|||||.|||||.||||||||.|||.|.||
BPUM_2125___p    292 AGCGATTTAGTCGAACCCGTATCTATAGACGAGGGCTATATTGACTTAAC    341

BSNT_03551___    345 CGATACACCATACAATAGCCG----CGCTCTAGAGACGGCAAAAGAAATC    390
                     ..||||.|||||    .||||    |||..|..|.|||||..|.||.||.
BPUM_2125___p    342 GCATACGCCATA----TGCCGAGCACGCGGTGAAAACGGCTCATGATATT    387

BSNT_03551___    391 CAAAGCAGGCTGCAAAAAGAGCTGCTGCTCCCGTCAAGCATAGGGATTGC    440
                     ||||..|||||...|.|.|||||..||||.||.|||||.||.||.|||||
BPUM_2125___p    388 CAAACGAGGCTTGTAGAGGAGCTTATGCTTCCTTCAAGTATTGGCATTGC    437

BSNT_03551___    441 GCCGAATAAATTTCTCGCTAAGATGGCGTCTGATATGAAAAAACCGCTTG    490
                     .||||||||||||.|.||.||.|||||||||.||..|||||||||..|.|
BPUM_2125___p    438 ACCGAATAAATTTTTAGCGAAAATGGCGTCTAATTGGAAAAAACCAATGG    487

BSNT_03551___    491 GAATTACGATTTTAAG--AAAGAGGCAAGTGCCTGATATCCTGTGGCCGC    538
                     |.||.||||||||..|  ||.|||  |.||.||..|.||.||.|||||||
BPUM_2125___p    488 GCATCACGATTTTGCGTAAACGAG--ATGTCCCCCAAATGCTATGGCCGC    535

BSNT_03551___    539 TTCCTGTTGGAGAGATGCACGGAGTCGG-CAAAAAGACAGCGGAAAAACT    587
                     |.||.|..||.||.|||||||||||.|| |||||| ||.||.||.|||.|
BPUM_2125___p    536 TGCCAGCGGGTGACATGCACGGAGTGGGACAAAAA-ACGGCAGATAAATT    584

BSNT_03551___    588 GAAGGGAC--TCGGCATCCATACAATCGGAGAGCTAGCTGCAGCTGATGA    635
                     |||  .||  |.|||||.|||||.||.|.|||..||||...|||..||||
BPUM_2125___p    585 GAA--AACGATTGGCATTCATACCATTGAAGACTTAGCGAAAGCAAATGA    632

BSNT_03551___    636 ----ACACTCCCTGAAACG-CCTGCTTGGCATAAACGGTCCGCGCCTTAA    680
                         |||||     |||.| ..|.||.|||||.||.||.|||       |
BPUM_2125___p    633 GTATACACT-----AAAGGAATTACTGGGCATCAATGGACCG-------A    670

BSNT_03551___    681 AAATAAAGCAAATGGC--AT--TCACCATG-CGCC--GGTTGACCCGGAG    723
                     .|.|||||||||.|||  ||  |.|.|||| ||.|  .||.|||||.||.
BPUM_2125___p    671 GATTAAAGCAAAAGGCCAATGGTGAACATGACGGCATTGTGGACCCAGAA    720

BSNT_03551___    724 CGCATTTACGAATTTAAAAGCGTCGGCAACTCATCGACACTTTCCCATGA    773
                     .|.||.||||||||||||...|||||.||.||.||.||.||..|.|||||
BPUM_2125___p    721 AGAATATACGAATTTAAATCTGTCGGGAATTCGTCAACTCTCCCTCATGA    770

BSNT_03551___    774 TTCCAGTGATGA---AGAAGAGC-TGTTAGGCGTCTTTAGA-AAGCTTGC    818
                     |||   |||.||   |||.||.| |||  .||||...|.|| |||| ||.
BPUM_2125___p    771 TTC---TGACGATCCAGATGAACTTGT--CGCGTTAATTGATAAGC-TGT    814

BSNT_03551___    819 CGC-TTCTGTGAGTGCCCGTTTACAGCGCAAGGAAGTCATGGC--TTCGA    865
                     |.| .|||||||||||..|.|||..|.|.||.|||||||||||  .||| 
BPUM_2125___p    815 CACAATCTGTGAGTGCAAGGTTAAGGAGAAAAGAAGTCATGGCAAATCG-    863

BSNT_03551___    866 AGCTTTTTATTATGATTAGATATGCGGATTGGAAAACCATCACAAGAAGC    915
                      |||..|||||||||||.|.||.||....|||||||..|||||..||||.
BPUM_2125___p    864 -GCTCCTTATTATGATTCGGTACGCAAGCTGGAAAAATATCACGCGAAGT    912

BSNT_03551___    916 ACCACGCTGAGAAACCCGATTGATCAAAAAAACGACAT-TTTGAAAGAAG    964
                     ..|||.||.|..||.||||..||||..||..|.|||.| |.|| |.|.||
BPUM_2125___p    913 GTCACCCTCACGAATCCGACGGATCGGAAGGAAGACTTATATG-AGGCAG    961

BSNT_03551___    965 CGGAGCACCTCTTTTTTAAACATTGGAATAAAAATCCTGTCAGGCTGCTT   1014
                     |...|||..|.||..||||||||||||||.|..|.|||||.||||| |||
BPUM_2125___p    962 CAAGGCAGTTATTCCTTAAACATTGGAATGACCAGCCTGTGAGGCT-CTT   1010

BSNT_03551___   1015 -GGCATTACCGGAACGGATTTAGTAGAA--AAAGAGCAGGCCTATAAACA   1061
                      ||..|.||.||.||.|||.|.||||||  ||| |||| |||..||||||
BPUM_2125___p   1011 AGGTGTGACGGGCACAGATCTTGTAGAACGAAA-AGCA-GCCGTTAAACA   1058

BSNT_03551___   1062 GCTCGATTTGTTCAGCTTTAATGAAGATGCGAAGGATGAGCCTATTCAGC   1111
                     |||.|||||.|||..||.||..||||||||.||.||.||||||.|.||..
BPUM_2125___p   1059 GCTTGATTTATTCTCCTATACAGAAGATGCAAAAGAAGAGCCTCTCCAAA   1108

BSNT_03551___   1112 AGAT----GATGGAAAAGCTGAATAAAAAGTACGGTACCAA--ACTGATC   1155
                     ..||    ||.|||    .||||..|||||||.||.|  ||  |||..||
BPUM_2125___p   1109 CCATTTTAGAAGGA----TTGAAAGAAAAGTATGGGA--AATCACTCGTC   1152

BSNT_03551___   1156 AGAAAAGGG-------GCAACGTTAAAAAAAGAGGAGAGCAAAACAAAGG   1198
                     ..||.||||       .|||.|    |||||   |||||||||||||..|
BPUM_2125___p   1153 CAAAGAGGGATGACCATCAAGG----AAAAA---GAGAGCAAAACAAGTG   1195

BSNT_03551___   1199 GAACAAGCTTTAATAAAGATTTTTTTCATGATGAAA-AGAAAAGCTGA--   1245
                     |||||||.||||||||||||||||||||.||.|||| ||.|||  |||  
BPUM_2125___p   1196 GAACAAGTTTTAATAAAGATTTTTTTCAGGACGAAAGAGGAAA--TGACT   1243

BSNT_03551___   1245 --   1245
                       
BPUM_2125___p   1244 AG   1245


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