Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03564 and BPUM_2135
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:06
# Commandline: needle
# -asequence dna-align/BSNT_03564___yqjA.1.24716.seq
# -bsequence dna-align/BPUM_2135___yqjA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03564___yqjA-BPUM_2135___yqjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03564___yqjA-BPUM_2135___yqjA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03564___yqjA
# 2: BPUM_2135___yqjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 996
# Identity: 683/996 (68.6%)
# Similarity: 683/996 (68.6%)
# Gaps: 69/996 ( 6.9%)
# Score: 2258.5
#
#
#=======================================
BSNT_03564___ 1 ATGTTTAAAATTGGTTATCGCACAATAAAGACCGCGCTAGGAACAGCTTT 50
|||||||||||.||.||.||.||..|.||.||.||..||||||||||..|
BPUM_2135___y 1 ATGTTTAAAATCGGCTACCGAACGCTGAAAACAGCATTAGGAACAGCGAT 50
BSNT_03564___ 51 GGCTATTTATATAAGCCAGTTATTGC------ATTTG-----CAAAACTT 89
.||.||||| |||||| |.||| |||||.|
BPUM_2135___y 51 CGCCATTTA-----------TATTGCGCAACTACTTGGTCTTCAAAATT- 88
BSNT_03564___ 90 CGCAT----CAGCAGGAATCATCACCATTTTGTGCATACAAATCACACAA 135
|| |.||.||.||.||.||.||..||||.||.||..|.|||.|.
BPUM_2135___y 89 ---ATTCCGCTGCCGGGATTATTACGATCCTGTGTATTCAGGTGACAAAG 135
BSNT_03564___ 136 AAACGGTCGCTTCAGGCCTCATGGGCCCGCTTTGCGGCATGTTGTCTGGC 185
||||||||.||||..||.|||.|.|||||.|||||.|||||..||||.||
BPUM_2135___y 136 AAACGGTCTCTTCTCGCATCAGGCGCCCGTTTTGCCGCATGCAGTCTTGC 185
BSNT_03564___ 186 AATTGTTTTTTCTTATCTCTTTTTCGAGCTTATTGGCTACCACCCGTTTG 235
.|||.|.|||||||||.|.||||||||.||.|||||.||.||.||.||||
BPUM_2135___y 186 CATTTTATTTTCTTATTTATTTTTCGATCTGATTGGGTATCATCCTTTTG 235
BSNT_03564___ 236 TTA----TCGGAGCGCTTCTTTTGATATTCATTCCGATAACGGTTCTGTT 281
|.| ||.|| .|||.||| ||.||.|||||||.|||.||..||.|
BPUM_2135___y 236 TGATTGGTCTGA-TGCTGCTT---ATCTTTATTCCGACAACCGTATTGCT 281
BSNT_03564___ 282 AAAAATTAACGAAGGTATCGTCACCAGTTCCGTTATTATCCTTCATTTAT 331
....|||||.|||||.||.|||||.|||||.||.||.|||||.|||||||
BPUM_2135___y 282 CCGCATTAAAGAAGGGATTGTCACAAGTTCAGTCATCATCCTCCATTTAT 331
BSNT_03564___ 332 ACATGTCCGGCGGCATTACGCTT--GCTTTCATCTGGAATGAAGTTCAGC 379
|||||||||||||.|||||.||| .||| |||||||||||..|.|..|
BPUM_2135___y 332 ACATGTCCGGCGGGATTACCCTTCACCTT--ATCTGGAATGAGCTACTAC 379
BSNT_03564___ 380 TGATTACGGTTGGCATCGGCGTCGCTCTATTGATGAACTTGTATATGCCT 429
|.||||||.||||..|.||.||.||.|||.|.||||||.||||||||||.
BPUM_2135___y 380 TCATTACGATTGGTGTTGGTGTGGCGCTAATCATGAACCTGTATATGCCA 429
BSNT_03564___ 430 AGTCTTGACCGGAAACTGATTGCCTACCGCAAAAAGATAGAGGATAACTT 479
|||.|.||....||.||.|....||||.||.||.||||.||.|..||.||
BPUM_2135___y 430 AGTGTCGATAAAAAGCTCAAACGCTACAGCGAACAGATTGAAGCCAATTT 479
BSNT_03564___ 480 TGCTGTCATTTTTGCAGAAATCGAACGGTATTTGTTAACTGGTGAGCAAG 529
.||....||.||||..||||||||||..|||||..|.||.||..|.||||
BPUM_2135___y 480 CGCAAAAATCTTTGAGGAAATCGAACAATATTTAATCACCGGGAAACAAG 529
BSNT_03564___ 530 ATTGGTCAGGAAAAGAAATTCCGGAAACGCACCAGCTCATTACGGAGGCT 579
|.|||.||||.||||||||.||.||.||.||.||..|.||.|..||.||.
BPUM_2135___y 530 ACTGGACAGGCAAAGAAATACCAGAGACACATCAATTGATCAAAGAAGCG 579
BSNT_03564___ 580 AAAAACCTGGCATATCGAGATGTGCAAAACCACATTTTGCGTTATGAAAA 629
|||...||.||||||||.|||||..|.|||||..|.||..|..|||||||
BPUM_2135___y 580 AAAGCTCTTGCATATCGTGATGTTGAGAACCATGTCTTAAGACATGAAAA 629
BSNT_03564___ 630 TCTGCATTATCATTATTTTAAAATGAGAGAAAAGCAATTTGAAATTATCG 679
.|||.|||||||||||||.||.|||||..||||||||||.|||||.||||
BPUM_2135___y 630 CCTGTATTATCATTATTTCAATATGAGGCAAAAGCAATTCGAAATCATCG 679
BSNT_03564___ 680 AACGCCTTCTCCCTAAAGTGACATCGATCTCCATTACGGTAGATCAGGGA 729
|.||..|.||.||.||..|.||.||.||.||||||||...|||.||.|||
BPUM_2135___y 680 AGCGTGTACTTCCGAAGATTACGTCCATTTCCATTACAACAGAACATGGA 729
BSNT_03564___ 730 AAAATGATCGCTGAATTTATTCATGATTTGCGGGAGGCGATACACCCTGG 779
.||||.||.||.||||..|||...||.||.||.||....||.|||||.||
BPUM_2135___y 730 CAAATCATTGCAGAATACATTAGAGACTTACGCGAACATATTCACCCAGG 779
BSNT_03564___ 780 GAATACAGCGTACA-AATTTCTGAAAAGACTTGC-----TGACATGAGAA 823
|||.||.|| .|| ||.|||| .||||| || |||.||||.|.
BPUM_2135___y 780 GAACACGGC--TCATAAGTTCT--TAAGAC--GCCTCATTGATATGAAAG 823
BSNT_03564___ 824 AAGAATTTGAGGAGATGCCGCTTCCGGCGACTAGAGAGGAATTTGAAGCA 873
||||.|||||..||.|.|||||.|||...||.|||||.||.|||||.|||
BPUM_2135___y 824 AAGAGTTTGATAAGCTACCGCTGCCGCAAACAAGAGAAGAGTTTGAGGCA 873
BSNT_03564___ 874 AGGGCCGCTCTCTTCCATCTTCTCGGCGAAATGGAACAATATTTAGTGAT 923
||.||.||.||.||.|||.|.|||||.|||||||||||||||||||||.|
BPUM_2135___y 874 AGAGCTGCACTGTTTCATTTCCTCGGAGAAATGGAACAATATTTAGTGCT 923
BSNT_03564___ 924 TAAAAGTTATTTTAAAGGAATAAAAGCGCAAAAATCACTCGGATGA 969
.|||||.|||||||||||.||.|||| ||.|.
BPUM_2135___y 924 GAAAAGCTATTTTAAAGGGATGAAAG---AATAG------------ 954
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