Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03565 and BPUM_2136
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:06
# Commandline: needle
# -asequence dna-align/BSNT_03565___yqiZ.1.24716.seq
# -bsequence dna-align/BPUM_2136___yqiZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03565___yqiZ-BPUM_2136___yqiZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03565___yqiZ-BPUM_2136___yqiZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03565___yqiZ
# 2: BPUM_2136___yqiZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 749
# Identity: 532/749 (71.0%)
# Similarity: 532/749 (71.0%)
# Gaps: 52/749 ( 6.9%)
# Score: 1803.0
#
#
#=======================================
BSNT_03565___ 1 ATGATTAAGGTTGAAAAGCTGTCAAAATCATTTGGGAAACACGAAGTATT 50
||||||||..|.||.||.||..|||||||.|||||.|||.|.||||||||
BPUM_2136___y 1 ATGATTAACATAGAGAAACTAACAAAATCTTTTGGTAAAAATGAAGTATT 50
BSNT_03565___ 51 AAAAAACATTTCAACAACAATCGCT------GAGGGTGAGGTTGTTGCCG 94
||||...| ||.|||.|| || ||.||.||.|||||.||.|
BPUM_2136___y 51 AAAAGGGA--TCGACACCA----CTATTAAAGAAGGGGAAGTTGTCGCAG 94
BSNT_03565___ 95 TGATCGGTCCTTCAGGCTCAGGCAAATCAACG-TTCTTACGCTGTTTAAA 143
|.||.||.||.||.||.|||||.|||||.||| ||||| |||||..|.||
BPUM_2136___y 95 TCATTGGACCATCTGGTTCAGGGAAATCGACGTTTCTT-CGCTGCATCAA 143
BSNT_03565___ 144 CCTGTTGGAAAAGCCTAACGGC-GGAACCATTACAATAAAAGACACAGAG 192
|.||.|.|||||||| .||..| ||....|||||.||..|.||.||.||.
BPUM_2136___y 144 CTTGCTTGAAAAGCC-GACTTCTGGTGTTATTACGATTCAGGATACTGAA 192
BSNT_03565___ 193 ATTACGAAGCCAAAAACCAACACATTAAAGGTCCGGGAAAACATCGGGAT 242
||.||.||.|||||||||||..||.|.||.||.||.||.||||||||.||
BPUM_2136___y 193 ATCACAAACCCAAAAACCAATGCACTCAAAGTGCGTGAGAACATCGGAAT 242
BSNT_03565___ 243 GGTTTTTCAGCATTTTCATCTCTTTCCGCACAAAACGGTTCTCGAAAACA 292
|||.|||||.||||||||.||.||.|||||.|||||.||.||.||.||.|
BPUM_2136___y 243 GGTATTTCAACATTTTCACCTATTCCCGCATAAAACAGTGCTGGAGAATA 292
BSNT_03565___ 293 TCATGTACGCGCCTGTCAATGTAAAAAAAGAATC-----AAAACAGGCTG 337
|||..||.|||||..|.|||||.||.||..|||| ||.||| ||..
BPUM_2136___y 293 TCACATATGCGCCAATGAATGTGAAGAATCAATCGAAGGAAGACA-GCAT 341
BSNT_03565___ 338 CAAAGGAGAAAGCTGAGGACCTGCTCCGCAAAGTCGGTTTGTTTG----A 383
|||| .|||||||.||.||.||....|||||.||..|.||.| |
BPUM_2136___y 342 CAAA----CAAGCTGAAGATCTACTGAAAAAAGTAGGCCTTTTAGAGAAA 387
BSNT_03565___ 384 AAAGCGAAATGACTATCCAAACCGTTTGTCTGGCGGACAAAAACAGCGTG 433
|||| ||||.|.|||.|||||.|||||.||.||.|||||.|||||||
BPUM_2136___y 388 AAAG----ATGATTTTCCGAACCGCTTGTCAGGTGGTCAAAAGCAGCGTG 433
BSNT_03565___ 434 TCGCGATTGCCAGGGCTCTTGCGATGAATCCGGACATTATGCTGTTTGAC 483
|.||.|||||..|.||.|||||.||||..||.|||||.||||||||||||
BPUM_2136___y 434 TTGCAATTGCACGTGCGCTTGCAATGACACCAGACATCATGCTGTTTGAC 483
BSNT_03565___ 484 GAGCCGACCTCCGCCCTTGATCCGGAGATGGTCAAAGAAGTGCTACAGGT 533
||.||.||.||.|||.|.|||||.||.||||||||.|||||.|||.||||
BPUM_2136___y 484 GAACCAACTTCTGCCTTAGATCCAGAAATGGTCAAGGAAGTACTAGAGGT 533
BSNT_03565___ 534 GATGAAAGAGCTGG-TCGAAACCGGCATGACCATGGTGATTGTCACACAT 582
.||||||||||||| || ||.|.||.|||||..|.|||||.|||||.|||
BPUM_2136___y 534 CATGAAAGAGCTGGCTC-AATCTGGAATGACACTTGTGATCGTCACTCAT 582
BSNT_03565___ 583 GAAATGGGCTTCGCAAAAGAAGTGGCAGACCGCGTGCTGTTTATGGACCA 632
|||||||||||.||||||||||||||.|||||||||.|.||||||||..|
BPUM_2136___y 583 GAAATGGGCTTTGCAAAAGAAGTGGCTGACCGCGTGATCTTTATGGATGA 632
BSNT_03565___ 633 AGGAATGATTGTCGAGGACGGCAATCCGAAGGAATTTTTT--AT----GT 676
.||.|..|||||.|||||.|..||.||...|.||||.||| || ||
BPUM_2136___y 633 TGGGAAAATTGTAGAGGATGCAAACCCTGTGCAATTCTTTGAATCACCGT 682
BSNT_03565___ 677 CGCCAAAATCCAAAAGAGCGC--AGGACTTTTTAGAGAAAATATTATAG 723
||.| |.||.|||| |.|||||.|||.|.|||||||||||.
BPUM_2136___y 683 CGTC--------ACAGCGCGCAAAAGACTTCTTACAAAAAATATTATAA 723
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