Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03567 and BPUM_2137
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:06
# Commandline: needle
# -asequence dna-align/BSNT_03567___yqiY.1.24716.seq
# -bsequence dna-align/BPUM_2137___yqiY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03567___yqiY-BPUM_2137___yqiY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03567___yqiY-BPUM_2137___yqiY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03567___yqiY
# 2: BPUM_2137___yqiY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 709
# Identity: 493/709 (69.5%)
# Similarity: 493/709 (69.5%)
# Gaps: 65/709 ( 9.2%)
# Score: 1732.5
#
#
#=======================================
BSNT_03567___ 1 ------------------------------------ATGAATTTGGATTT 14
||| ||.|||||
BPUM_2137___y 1 TTGATTTTGTATGAAGGCATAAAAAAGGAGACTGTCATG---TTAGATTT 47
BSNT_03567___ 15 TTCAGCAACG--ATCCCCCAAATTCCTTTTATATTAGAA-GGCTTGGCAA 61
|..|| |.| ||.||.||.||.||.|||||.|||||| ||||| ||
BPUM_2137___y 48 TAAAG--ATGTAATACCTCAGATGCCCTTTATTTTAGAAGGGCTT---AA 92
BSNT_03567___ 62 --TTACATTAAAAATTGTTGTTGTATCTGCTATTATCGGACTTATACTCG 109
|.|||.|....|||||.||.|||||...|.||.|.|||.||||..|.|
BPUM_2137___y 93 GGTCACACTTTCTATTGTAGTGGTATCACTTTTTCTTGGATTTATCTTAG 142
BSNT_03567___ 110 GTATTGTGCTAA-GCTTATGCAAGATCAGCACATT----CCGCCCGTTTA 154
|.|||.|..||| |||| |||||.||.|||..||| |||| |.|
BPUM_2137___y 143 GAATTTTATTAACGCTT-TGCAAAATTAGCGTATTTAAGCCGC----TCA 187
BSNT_03567___ 155 TCTGGATCGCTGATTTTTATACATCAGTGTTCCGAGGCACGCCTTTAGTG 204
|.|||.|.||.|||||||||||.||..|.|||||||||||.||..|.|||
BPUM_2137___y 188 TTTGGCTTGCAGATTTTTATACGTCCATCTTCCGAGGCACACCGCTTGTG 237
BSNT_03567___ 205 CTGCA---GCTTATGATTGTCTATTTTGGCCTTCCTCAGCTGCTCGGATT 251
||.|| |||.||.||| |||||||||||.||||||||.|||||.||
BPUM_2137___y 238 CTTCAATTGCTCATTATT---TATTTTGGCCTGCCTCAGCTTCTCGGGTT 284
BSNT_03567___ 252 TCAAATTGACCAGTTTTGGGCTGCGGTTGTCGCATTGTCTTTGAATTCCG 301
||||||.||.||.|..||||||||.||.|.||||||..|..|.||.||.|
BPUM_2137___y 285 TCAAATCGATCAATACTGGGCTGCTGTAGCCGCATTTACACTAAACTCTG 334
BSNT_03567___ 302 CCGCTTATGTATCGGAAATTATCAGAGCCGGAATCAATGCCATTGATAAA 351
|.||.||.|||||.||||||||..|.||.||.||.|||||||||||||||
BPUM_2137___y 335 CGGCATACGTATCTGAAATTATTCGTGCTGGTATTAATGCCATTGATAAA 384
BSNT_03567___ 352 GGGCAAAAAGAAGCTGCTGTTGCACTCGGTGTCCCGTATGGAAAAATGAT 401
||.|||||||||||.||.|||||..|.|||.|.||.||||..||||||||
BPUM_2137___y 385 GGTCAAAAAGAAGCAGCCGTTGCTTTAGGTATTCCTTATGCTAAAATGAT 434
BSNT_03567___ 402 GAAGGATCTGCTGCTGCCGCAGGCCTTCAAAAATATATCACCTGCAATTG 451
||||||..|..||||.|||||.||.||.||||||||.|||||||||.|||
BPUM_2137___y 435 GAAGGACTTATTGCTTCCGCAAGCATTTAAAAATATTTCACCTGCACTTG 484
BSNT_03567___ 452 TGAATGAATTAATTACGTTAACAAAAGAATCGGCGATCGTTACCGTCATC 501
||||.|||...|||||..|.|||||||||||.||.||.||.||.|||||.
BPUM_2137___y 485 TGAACGAAACGATTACACTGACAAAAGAATCAGCTATTGTGACAGTCATT 534
BSNT_03567___ 502 GGGCTTGGTGATGTCATGAGACGCGCATATCAAGCTGGCGCCGCCACTTA 551
||..|.||.||||||||||||||.||.||||||||.||.||||.|||.||
BPUM_2137___y 535 GGATTAGGCGATGTCATGAGACGAGCCTATCAAGCAGGTGCCGTCACGTA 584
BSNT_03567___ 552 CAATTACCTTGAGCCGCTCATTATCGCGGGATTGATTTATTATGTGCTTG 601
.|||||.|||||.|||||.|||.|.||.||..|.|||||||||||..|.|
BPUM_2137___y 585 TAATTATCTTGAACCGCTTATTTTTGCCGGTCTCATTTATTATGTCATCG 634
BSNT_03567___ 602 TCCTGATTTTAACGTTTATCGGCAAGGCTGTAGAAAGGAAGCTGAAATCC 651
|.||..||.|.||.|||.|||||||..|.||.|||||||||.|.|||||.
BPUM_2137___y 635 TGCTTGTTCTCACCTTTGTCGGCAAATCGGTGGAAAGGAAGTTAAAATCA 684
BSNT_03567___ 652 AATGATTAA 660
|||||||||
BPUM_2137___y 685 AATGATTAA 693
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