Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03569 and BPUM_2138

See Amino acid alignment / Visit BSNT_03569 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:06
# Commandline: needle
#    -asequence dna-align/BSNT_03569___yqiX.1.24716.seq
#    -bsequence dna-align/BPUM_2138___yqiX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03569___yqiX-BPUM_2138___yqiX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03569___yqiX-BPUM_2138___yqiX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03569___yqiX
# 2: BPUM_2138___yqiX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 815
# Identity:     537/815 (65.9%)
# Similarity:   537/815 (65.9%)
# Gaps:          97/815 (11.9%)
# Score: 1618.0
# 
#
#=======================================

BSNT_03569___      1 ATGAAAAAATGGCTCTTATTACTTGT---AGCTG--CCTGCATTACCTTT     45
                     ||||||||.|||.|.|||||||||.|   |||||  |.||||     ..|
BPUM_2138___y      1 ATGAAAAAGTGGTTATTATTACTTATGACAGCTGGTCTTGCA-----GCT     45

BSNT_03569___     46 GCATTATCTGCTTGCGG------CTCAAGCAATTCA---GGTTCAGAAGG     86
                     |||.|..|.|||||.||      .||.|..||||||   |..||||.||.
BPUM_2138___y     46 GCACTCGCAGCTTGTGGAACTTCTTCTAATAATTCAAACGCATCAGGAGA     95

BSNT_03569___     87 CGGCAAGAAAAAATTAATTATGGGTACTTCGGCGGATTACAAACCGTTTG    136
                     .|   |.||||.|.|..||||||..||.||.||.|||||....||.||||
BPUM_2138___y     96 TG---ACAAAACACTCGTTATGGCGACATCAGCAGATTATCCGCCATTTG    142

BSNT_03569___    137 AATATAAAGAAGGCGATAATATTGTCGGCTTTGATGTAGAGTTGGCAAAA    186
                     |||..|||||.||.|||||.||||||||.||||||||.||..|.||||.|
BPUM_2138___y    143 AATCAAAAGACGGAGATAAAATTGTCGGTTTTGATGTTGATCTTGCAACA    192

BSNT_03569___    187 GCTCTGGC---AAAGAAGG----CAGGCTATGAAATTGAAGTGCAGGATA    229
                     ||.||.||   ||||||.|    ||.|||| ||||||      ||.||||
BPUM_2138___y    193 GCACTAGCGAAAAAGAACGGCTACAAGCTA-GAAATT------CAAGATA    235

BSNT_03569___    230 TGGACTT--CAACAG-CTTAATTA-CAGCGCTTAAATCAAA-ACAGGTGG    274
                     ||||.||  ||  || |||  .|| |||||||||||.|||| |.||.| |
BPUM_2138___y    236 TGGATTTTGCA--AGTCTT--GTATCAGCGCTTAAAACAAATAAAGCT-G    280

BSNT_03569___    275 ATCTCGTTCTGTCAGGAATGACACCAACGCCTGAG-----CGTAAAAAAC    319
                     ||.|.||.||..||||.|||||.||.||     ||     ||||||||||
BPUM_2138___y    281 ATATTGTCCTTGCAGGCATGACTCCTAC-----AGAAAAACGTAAAAAAC    325

BSNT_03569___    320 AAGTTGATTTTTCAGATGTGTATTACACAGCGAACCATATGATTGTCAGC    369
                     ||.|.|||||.||.|||||.|||||||..||.||..|..|..||||| .|
BPUM_2138___y    326 AATTAGATTTCTCTGATGTTTATTACAATGCTAAAAACTTAGTTGTC-TC    374

BSNT_03569___    370 AAA-AAAGACAGCGGCATTCAATCTTTGAAAGACCTGAAAGGAAAAACAG    418
                     ||| |||...|||||.||..||.|...|||||||.|.||||..|||||||
BPUM_2138___y    375 AAAGAAATCTAGCGGAATGAAAACAGAGAAAGACTTAAAAGATAAAACAG    424

BSNT_03569___    419 TTGGCGTTCAGCTTGGCTCTATTCAGGAAGA-GAAG----------GGGA    457
                     |.||||||||..|.||.||.||.|||.|.|| ||||          |..|
BPUM_2138___y    425 TCGGCGTTCAATTAGGTTCGATCCAGCAGGATGAAGCAAACGGTTTGCAA    474

BSNT_03569___    458 AAGAGCTTTCTCCGGAATATGGTTTTAAAACAGAAGACCGCAACAGAATT    507
                     ||||           |||||...||.|||...|||||||||||.|.|||.
BPUM_2138___y    475 AAGA-----------AATATAACTTAAAAGTGGAAGACCGCAATAAAATC    513

BSNT_03569___    508 TCTGATTTGGTGCAGGAAATCAAATCTGACCGCTTCGATGCCGCGATTAT    557
                     ||||||.|..|.||.|||||||||.|.|..||.||.|||||.||.|||||
BPUM_2138___y    514 TCTGATATCATTCAAGAAATCAAAGCAGGTCGTTTTGATGCAGCCATTAT    563

BSNT_03569___    558 TGAAGACATTGTTGCAGAAGGGTATTTCAAATCAAATGATGACCTGCAAG    607
                     ||||||.|..||.||.|..||.|||||.|||..|.|..|.||..|.||||
BPUM_2138___y    564 TGAAGATAAAGTAGCTGCTGGTTATTTGAAAAAAGAAAAAGATTTCCAAG    613

BSNT_03569___    608 GCTTTGTGATTCCTGATGCGAA-AG--CGGAAGAAGCCGGTTCAGCAATT    654
                     .||||| ||||        ||| ||  |..|.|||   ||||||||.|||
BPUM_2138___y    614 CCTTTG-GATT--------GAATAGTTCAAACGAA---GGTTCAGCTATT    651

BSNT_03569___    655 GCTTTC-AGAAAGGACAGTGAACTGACAGACAAATTCAATAAAGCGCTCA    703
                     ||.||| ||||| .|.||.||..|.||||..|||||.||||||.|..|.|
BPUM_2138___y    652 GCATTCAAGAAA-AATAGCGACTTAACAGCTAAATTTAATAAATCATTAA    700

BSNT_03569___    704 AGGAAATGGAAGATAACGGAGAGCTTGAGAAATTGAAGAAAAAATGGTTC    753
                     |.||||||.||||.||.||.||.|||||.|||||.|..|||||||||||.
BPUM_2138___y    701 AAGAAATGCAAGACAATGGCGAACTTGATAAATTAATTAAAAAATGGTTT    750

BSNT_03569___    754 ACTGGCGAGAAGTAA    768
                     .|||..||.||.|||
BPUM_2138___y    751 GCTGATGAAAAATAA    765


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03569 and BPUM_2138

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
