Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03585 and BPUM_2148
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:07
# Commandline: needle
# -asequence dna-align/BSNT_03585___ptb.1.24716.seq
# -bsequence dna-align/BPUM_2148.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03585___ptb-BPUM_2148.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03585___ptb-BPUM_2148.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03585___ptb
# 2: BPUM_2148
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 947
# Identity: 611/947 (64.5%)
# Similarity: 611/947 (64.5%)
# Gaps: 100/947 (10.6%)
# Score: 1804.5
#
#
#=======================================
BSNT_03585___ 1 ATGAAGCTGAAAGATTTAATCGGCAAAGCGTCGATGCACA-----AAAAT 45
||||||||..|.|||.|.||....||||| |||.|| |.|||
BPUM_2148 1 ATGAAGCTTGACGATCTGATTATGAAAGC-----TGCCCAGCTGCAGAAT 45
BSNT_03585___ 46 AAGACCATTGCGGTTGCTCATGCTGAGGATGAGGAAGTGATCCGGGCTGT 95
||.||...|||.||.||||||||.||.||.||.||||||.|.|..||..|
BPUM_2148 46 AAAACTGCTGCTGTGGCTCATGCAGAAGACGAAGAAGTGCTTCATGCCAT 95
BSNT_03585___ 96 AAAGCTGGCTGCCGAGCACCTATCCGCCCGTTT----CTTGTTAACGGGC 141
.|||.||||....||.|.|..|..|||.||.|| ||.||| |||
BPUM_2148 96 CAAGATGGCAATTGAACGCAAAGTCGCTCGCTTCCTGCTGGTT---GGG- 141
BSNT_03585___ 142 GACAGCACA---AAACTGAACGAGCTG-----ACATC-----ATCCATGC 178
|.||.| ||.|||||.|||||| |||.| |||.|||
BPUM_2148 142 ---AACAAACGCAACCTGAAGGAGCTGGTGAAACAGCATGAGATCAATG- 187
BSNT_03585___ 179 AAGGGCATCAAGTG----GAAATCGTCCATGCCGATACTCCTGAGGAATC 224
||| |.|| ||.||..|.|||.|.|||.|||||||.|||||
BPUM_2148 188 AAG-------ACTGGATAGATATTATTCATTCGGATTCTCCTGAAGAATC 230
BSNT_03585___ 225 -GGCAAAATTAGCGGTTCGTGCTGTGCATCATAAAACA-GCGGACGTTTT 272
|.||||||| ||.||.|..||.|||..|.| .||.|| ||.||..|.||
BPUM_2148 231 AGCCAAAATT-GCCGTGCAGGCAGTGAGTGA-GAAGCATGCAGATATATT 278
BSNT_03585___ 273 AATGAAAGGCAATGTGCCGACTTCTGTTTTGCTTAAAGCGGTATTGAACA 322
.|||||.||..||||..||||..|.|||.|..|.|||||||||.||||.|
BPUM_2148 279 GATGAAGGGGCATGTCACGACAGCCGTTCTTTTAAAAGCGGTACTGAATA 328
BSNT_03585___ 323 GACAGGAGGGGCTTCGGTCATCAAGTGTCCTTTCCCACGTGGCTGTCTTT 372
.|.||.|.|||||.|||.||.|.|||||.||.||.||.||.||.|..|||
BPUM_2148 329 AAGAGTACGGGCTGCGGACAGCGAGTGTTCTATCACATGTCGCGGCATTT 378
BSNT_03585___ 373 GATATACCGGATTTTGACCGGCTGATGTTTGTGACAGATTCGGCAATGAA 422
||..|.||||..|||||.|||.|.||.|.|||.||||||||.||.|||||
BPUM_2148 379 GAAGTGCCGGGCTTTGATCGGTTTATTTATGTCACAGATTCTGCGATGAA 428
BSNT_03585___ 423 TATTGCTCCT--TC-------GCTGGAAGAGCTTCGGCA-GATTTTGCAA 462
.||.||.||| || |.|..|||||.|| | ||| .
BPUM_2148 429 CATCGCGCCTGATCTAAACATGTTCAAAGAGATT----ACGAT------C 468
BSNT_03585___ 463 AATGCCGTTCATGTGGCCCATGCAGTGGGGAACAATATGCCAAAAGCAGC 512
|||||.|||||.||.||.||.||.||.||.|||.|.||||||||.|..||
BPUM_2148 469 AATGCTGTTCAAGTAGCGCAAGCTGTCGGAAACGACATGCCAAAGGTTGC 518
BSNT_03585___ 513 TGCTCTGGCAGCGGTCGAAACGGTGAACCCTAAAATGGAAGCGACCGTGA 562
||.|.|..|.|||||.||....||||||||...||||||..|.||..|||
BPUM_2148 519 TGTTTTATCTGCGGTAGAGGTTGTGAACCCAGCAATGGATTCCACATTGA 568
BSNT_03585___ 563 ATGCAGCTGC---TCTAGCTCAAATGTACAAAAGGGGCCAGATCAAA--- 606
||||.|| .||.||.||||||.|.|| ||.||..||||
BPUM_2148 569 ---CAGCGGCAAGCCTGGCGCAAATGAATAA-----GCGAGGGCAAATTT 610
BSNT_03585___ 607 --GGCTGCATTGTTGATGGACCACTTGCTTTGGATAACGCAGTTTCACAA 654
||||||.|..||||.||||||||||||.|.||.||.||..||||.|||
BPUM_2148 611 CTGGCTGCCTCATTGACGGACCACTTGCTCTAGACAATGCCATTTCTCAA 660
BSNT_03585___ 655 ATTGCCGCGGCCCAGAAAAAAATTTCGGGAGACGTAGCGGGCAACGCAGA 704
|..|||||..|.||.|||||.|||.||.|.||.||.||.||..|.|||||
BPUM_2148 661 ACAGCCGCTTCTCATAAAAATATTACGAGTGATGTCGCCGGTCATGCAGA 710
BSNT_03585___ 705 TATCCTTCTCGTCCCAACAATTGAGGCCGGCAATATTTTATATAAATCTC 754
|||..|.||.||.|||||.|||||.||.||.||.|||.|.||||||||||
BPUM_2148 711 TATTTTGCTTGTGCCAACGATTGAAGCAGGGAACATTCTTTATAAATCTC 760
BSNT_03585___ 755 TGATTTATTTTGCCAAGGCCAGCGTGGCGGCTGTCATTACAGGAGCCAAA 804
|.||.||.|||||..|.||.|..||.|.||||||..|..|||||||.||.
BPUM_2148 761 TCATCTACTTTGCACATGCAAAGGTTGGGGCTGTGGTGGCAGGAGCGAAG 810
BSNT_03585___ 805 GCACCGATTGCCTTAACAAGCAGAGCGGACTCTGCTGAAAATAAACTGTA 854
||.||||||||.|||||||||.|..||||..|.||.||||.|||.||.||
BPUM_2148 811 GCGCCGATTGCTTTAACAAGCCGGTCGGATACAGCCGAAAGTAAGCTTTA 860
BSNT_03585___ 855 TTCCATTGCGCTGGCAATATGCGCATCTGAAGAATACA-CACATTAG 900
|||.||||||||.|| |||||| |||| ||.||||.
BPUM_2148 861 TTCAATTGCGCTTGC--------CATCTG-----TACATCAAATTAA 894
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