Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03600 and BPUM_2151

See Amino acid alignment / Visit BSNT_03600 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:08
# Commandline: needle
#    -asequence dna-align/BSNT_03600___yqiK.1.24716.seq
#    -bsequence dna-align/BPUM_2151___glpQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03600___yqiK-BPUM_2151___glpQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03600___yqiK-BPUM_2151___glpQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03600___yqiK
# 2: BPUM_2151___glpQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 834
# Identity:     461/834 (55.3%)
# Similarity:   461/834 (55.3%)
# Gaps:         198/834 (23.7%)
# Score: 1116.5
# 
#
#=======================================

BSNT_03600___      1 ATGACAAAGATTTTTGCCCACCGGGG-------GGCATCAGGTCAATTTC     43
                     |||||.||.||||||||.||..|.||       ||.|||       |.||
BPUM_2151___g      1 ATGACGAAAATTTTTGCACATAGAGGTTTTAAAGGAATC-------TATC     43

BSNT_03600___     44 CCGAAAATACAATGCTTGCATTTGAAAAAGGAATTGAAGCCGGAGCGGAT     93
                     |.||||||||.|||.|.||.|||||..|.|...||.|..|.|||||.||.
BPUM_2151___g     44 CTGAAAATACGATGATAGCCTTTGAGCACGCGCTTCATTCAGGAGCTGAC     93

BSNT_03600___     94 GGGATAGAGCTTGATGTACAGCTGACGAAAGACGG-ACGCATTGTTGTGA    142
                     |||||.|||||.|||||.||||||||||||||.|| |.|| |||.|||.|
BPUM_2151___g     94 GGGATTGAGCTGGATGTCCAGCTGACGAAAGATGGCAGGC-TTGCTGTCA    142

BSNT_03600___    143 TTCATGATGA-AAGACTTAATCGCACGAC----ATCACTTAAAGGATTCG    187
                     ||||.||||| ||| ||.||..|.||.||    ||.||    |||.||.|
BPUM_2151___g    143 TTCACGATGAGAAG-CTGAACAGAACAACGAATATGAC----AGGCTTAG    187

BSNT_03600___    188 TGAAGG---ATACAACCTATGATGAGGTAAAGACTGCGA-ATGCGGCCGC    233
                     ||||.|   |||||   |||||.|||.||||..|.| || |||||     
BPUM_2151___g    188 TGAAAGACCATACA---TATGAAGAGTTAAAAGCAG-GAGATGCG-----    228

BSNT_03600___    234 TGGTCA------CGATCAAGCGTACAGCGATATAAAAGTGCCGCTGCTAG    277
                      .||||      ..||.|||              |||   |||.|||| |
BPUM_2151___g    229 -AGTCATTCTTTTTATGAAG--------------AAA---CCGGTGCT-G    259

BSNT_03600___    278 AA--GATGTGCTCTCGTGGGCGGTAAAAAAGGATT----TTC--------    313
                     .|  .|| |.||||..|||      |..|||.|||    .||        
BPUM_2151___g    260 TATCCAT-TCCTCTTTTGG------AGGAAGTATTGGAGCTCGTGACCCA    302

BSNT_03600___    314 ----TCATC----------AACATTGAATTAAAAAACAGCGTGATC----    345
                         |||||          ||.||||||.|.||||||       ||    
BPUM_2151___g    303 GCAATCATCACTCATTATGAATATTGAACTGAAAAAC-------TCCATT    345

BSNT_03600___    346 ---CGCTATGAGGGAATGGAAGAAAAAGTGCTGGAGGC--AGTGAAGCGA    390
                        ||.|||...||.||.|||||.||.||...||| ||  |.||||....
BPUM_2151___g    346 TATCGATATCCAGGTATTGAAGAGAAGGTAAAGGA-GCAAATTGAACACT    394

BSNT_03600___    391 TTCAATGTAGAGGACAGAGTCATCCTATCCACCTTTAATCATGACAGCTT    440
                     ||||| .||||.||..|.||..|..|.||..|.|||.||||.|.|||.||
BPUM_2151___g    395 TTCAA-ATAGAAGATCGTGTACTTGTCTCATCGTTTCATCACGGCAGTTT    443

BSNT_03600___    441 GGCGCTATGCGCCCGGCTTGCGCCGCATATCGAACGGGCAGTATTAACTT    490
                     .||.||.|....|..|||...|||||||.|.||.|..||.||..|.||..
BPUM_2151___g    444 AGCTCTTTTTCACAAGCTAATGCCGCATGTTGAGCTTGCTGTTCTCACAA    493

BSNT_03600___    491 CAGATGTGCTTTATCAGGCAGATCGATATATCGCGTCTA-------TTCC    533
                     ..||||||.||.|||||.||||  |||.||     |.||       |.||
BPUM_2151___g    494 TGGATGTGATTCATCAGCCAGA--GATGTA-----TATAAAAACAGTACC    536

BSNT_03600___    534 GGCTTCCGGCTATCACCCGAAGCTAAACAGCCCAGGGGTCACAGATGAAG    583
                     .||....||.|||||||||||..||||..|..|||||||.|||.|.||||
BPUM_2151___g    537 TGCAAGAGGGTATCACCCGAATATAAAGGGTGCAGGGGTAACAAAAGAAG    586

BSNT_03600___    584 ----------------TACTGA--AGAAAATGAGGAACGGTTTGATTAAG    615
                                     |.||||  ||.||.|.|                 
BPUM_2151___g    587 TCGTATCGGCTCTCCATGCTGACCAGCAAGTCA-----------------    619

BSNT_03600___    616 GTAAGGCCGTATACAGTCAATCGTCCGGAA---GATATGAAGCGTCTCAT    662
                      |.|||||.|.|||||||||..||   |||   .|.|||||         
BPUM_2151___g    620 -TTAGGCCATTTACAGTCAACAGT---GAAAAGCAAATGAA---------    656

BSNT_03600___    663 TGAAGC-----------GGGAGCAGACGGCATGTTTACCGACTTTCCAGA    701
                       ||||           .||.|..|||||.||.||.||.||.|||||.||
BPUM_2151___g    657 --AAGCATGTTTTCCTTAGGTGTCGACGGAATCTTCACAGATTTTCCTGA    704

BSNT_03600___    702 -AAAGGCTTCGGCATTGCTGAA-AAATG-AATAG    732
                      |.||.|.||...||....||| ||||| ||||.
BPUM_2151___g    705 TAGAGCCGTCAAAATAAGAGAAGAAATGAAATAA    738


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