Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03609 and BPUM_2154
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:08
# Commandline: needle
# -asequence dna-align/BSNT_03609___spo0A.1.24716.seq
# -bsequence dna-align/BPUM_2154___spo0A.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03609___spo0A-BPUM_2154___spo0A.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03609___spo0A-BPUM_2154___spo0A.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03609___spo0A
# 2: BPUM_2154___spo0A
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 815
# Identity: 629/815 (77.2%)
# Similarity: 629/815 (77.2%)
# Gaps: 22/815 ( 2.7%)
# Score: 2354.5
#
#
#=======================================
BSNT_03609___ 1 GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAG 50
|||||||||||||||||.|||||.||||||||.|||||||||||.||..|
BPUM_2154___s 1 GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGG 50
BSNT_03609___ 51 CCTGTTAAGTGAATATATAGAAGGACAGGAAGACATGGAAGTGATCGGCG 100
|||.||.|..||.|||||.||.|||||||||||.||||||||..|.||||
BPUM_2154___s 51 CCTTTTGACAGAGTATATTGAGGGACAGGAAGATATGGAAGTACTTGGCG 100
BSNT_03609___ 101 TTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCC 150
|.||.|||||.||.||||||||.|||.|..|.||||||||.|||||.|||
BPUM_2154___s 101 TGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCC 150
BSNT_03609___ 151 GATGTGCTCGTATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGT 200
||.||.|||.|.|||||||||||.||||||||||||||.||.|||||.||
BPUM_2154___s 151 GACGTTCTCCTCTTAGATATTATCATGCCGCATTTAGATGGCCTTGCTGT 200
BSNT_03609___ 201 TTTAGAGAGGC-----TGAGGGAATCA--GATCTGAAAAAACAGCCGAAT 243
..|.|| |.|| ||| ||.|| ||..|||..||||||||.|.|
BPUM_2154___s 201 ACTGGA-ACGCCTCCGTGA---AAACAATGACATGACCAAACAGCCAAGT 246
BSNT_03609___ 244 GTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGT 293
|||||||||||.|||||.|||||.||.||||||||.||||||||.||.||
BPUM_2154___s 247 GTCATTATGCTAACAGCGTTTGGACAAGAAGATGTGACGAAAAAAGCAGT 296
BSNT_03609___ 294 CGATTTAGGCGCGTCCTACTTTATTCTCAAA-CCGTTTGATATGGAAAAC 342
.|||||.|||||.||.|| |||..|||.||| ||.|||||||||||||||
BPUM_2154___s 297 TGATTTGGGCGCATCTTA-TTTCATCTTAAAGCCATTTGATATGGAAAAC 345
BSNT_03609___ 343 CTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCA-GTGTGACGC 391
||.|||||||||||.||.||.|||||.|||||.|.|| || ..||.||.|
BPUM_2154___s 346 CTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCA-CACAAGTCACCC 394
BSNT_03609___ 392 ATCGTGCGCCATC-ATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGA 440
||||..|..|||| ||| ||||.||||.||.|.||.|..| |.|||||
BPUM_2154___s 395 ATCGATCTTCATCTATC-CAAAACAGTGTTCTTCGAAATA---AACCTGA 440
BSNT_03609___ 441 ACCAAAGAAG-AAAAATCTCGACGCGAGCATCACAAGCATTATCCATGAA 489
|||.|| |.| |||||..|.||.||||||||.||.|..|||||.|||||.
BPUM_2154___s 441 ACCGAA-ACGTAAAAACTTAGATGCGAGCATTACGACGATTATTCATGAG 489
BSNT_03609___ 490 ATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAAT 539
||.|||||.||.||.|||||||||||.||..|.||..|..|.|||||.||
BPUM_2154___s 490 ATTGGCGTACCCGCTCATATTAAAGGTTACTTATACTTAAGAGAAGCCAT 539
BSNT_03609___ 540 CTCAATGGTATACAATGACATCGAATTGCTCGGCAGCATTACAAAAGTCC 589
.||||||||.||||||||||||||..|.|||||.|||||.||||||||..
BPUM_2154___s 540 TTCAATGGTGTACAATGACATCGAGCTTCTCGGAAGCATCACAAAAGTGT 589
BSNT_03609___ 590 TCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAA 639
|.|||||.|||||.||.||.|||||||||||.|||||.|||.|.||||||
BPUM_2154___s 590 TGTATCCAGACATTGCGAAGAAATTTAACACGACCGCGAGCAGAGTAGAA 639
BSNT_03609___ 640 AGAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGA 689
.|.|||||.||||||||.|||||||||||.|||||||||||||||||.||
BPUM_2154___s 640 CGGGCGATTCGTCATGCGATTGAAGTGGCTTGGAGCAGAGGAAACATCGA 689
BSNT_03609___ 690 TTCCATTTCCTCGTTGTTTGGTTATACTGTCAGCATGACAAAAGCTAAAC 739
||||||||||||..|.|||||||||||.|||||.|||.|.|||||.||||
BPUM_2154___s 690 TTCCATTTCCTCACTCTTTGGTTATACAGTCAGTATGTCTAAAGCGAAAC 739
BSNT_03609___ 740 CTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAG 789
|.|||||...||||||.||.||.|||||.||.|||...||..|.||.|||
BPUM_2154___s 740 CAACCAATTCTGAATTTATCGCTATGGTGGCTGATCGTCTACGCTTGGAG 789
BSNT_03609___ 790 CATAAGGCTTCTTAA 804
||||..|||...|||
BPUM_2154___s 790 CATAGAGCTAGCTAA 804
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