Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03613 and BPUM_2155
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:08
# Commandline: needle
# -asequence dna-align/BSNT_03613___spoIVB.1.24716.seq
# -bsequence dna-align/BPUM_2155___spoIVB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03613___spoIVB-BPUM_2155___spoIVB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03613___spoIVB-BPUM_2155___spoIVB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03613___spoIVB
# 2: BPUM_2155___spoIVB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1320
# Identity: 957/1320 (72.5%)
# Similarity: 957/1320 (72.5%)
# Gaps: 81/1320 ( 6.1%)
# Score: 3350.5
#
#
#=======================================
BSNT_03613___ 1 ATGCCCGATAACATCAGAAAAGCAGTAGGTTTAATTCTCCTTGTTTCGTT 50
||||||||.||.||.||||||||..|.|||.|.||||||||||||||.||
BPUM_2155___s 1 ATGCCCGAAAAGATGAGAAAAGCCATTGGTGTGATTCTCCTTGTTTCTTT 50
BSNT_03613___ 51 ATTAAGTGTA-GGTTTAT--GCAAACCGCTAAAAGAATATTTATTGATTC 97
|.|||||..| ||||||| |||.| .|.||.|||||..|....||||
BPUM_2155___s 51 AATAAGTACAGGGTTTATGAGCATA---GTGAAGGAATACATCAGCATTC 97
BSNT_03613___ 98 CAACGCAAATG--AGAGTATTTGAAACCCAAACA----CAAGCGATTGAA 141
||| |||||| ...||||||||| ||||| ||.||.|||||.
BPUM_2155___s 98 CAA--CAAATGTTGCTGTATTTGAA----AAACAGAAGCACGCAATTGAC 141
BSNT_03613___ 142 ACAAGTTTATCGGTAAACGC-TCAGACACCA--GAATCCTCAGAAGCGTT 188
|| |||..||.|.|| |||| ||| |..||.|||.||||.||
BPUM_2155___s 142 AC------ATCAATAGAAGCGTCAG---CCAATGCTTCTTCACAAGCCTT 182
BSNT_03613___ 189 TA------CAGTAAAGAAAG-ATCCGCATGAAATCAAGGTGACGGGCAAA 231
|| ||| |.|.|||| |||.||.|||| ||.||.||..||
BPUM_2155___s 183 TAGTCTTTCAG-AGAAAAAGAATCAGCTTGAA------GTAACAGGACAA 225
BSNT_03613___ 232 AAATCAGGTGAGTCAGAATTGGTATATGATCTTGCCGGATTTCCAATTAA 281
||..||||..|..|.|||.|.||.||||||.||...||||||||.|||||
BPUM_2155___s 226 AAGGCAGGAAAAGCCGAAATTGTTTATGATTTTAAAGGATTTCCTATTAA 275
BSNT_03613___ 282 AAAAACAAAAGTGCATGTTCTTCCTGATTTAAAGGTTATACCTGGCGGAC 331
.|||||||||.|..|.|||||.|||||.|||||.||..|.|||||.||||
BPUM_2155___s 276 GAAAACAAAAATCGACGTTCTCCCTGAATTAAAAGTCGTTCCTGGAGGAC 325
BSNT_03613___ 332 AATCAATCGGTGTAAAACTTCATTCCGTCGGTGTTCTTGTCGTCGGATTT 381
||||.||.||.||.||.||.|||||.||.||.|||||.||.||.||.|||
BPUM_2155___s 326 AATCCATTGGCGTCAAGCTCCATTCTGTAGGAGTTCTCGTTGTAGGTTTT 375
BSNT_03613___ 382 CATCAAATCAATACAAGTGAAGGCAAAAAATCTCCGGGAGAAACGGCCGG 431
||||||||||..|||...||.|||||||||||.||.||.|||.|.||.||
BPUM_2155___s 376 CATCAAATCACAACAGCAGACGGCAAAAAATCACCAGGCGAAGCCGCAGG 425
BSNT_03613___ 432 AATTGAAGCGGGCGACATCATTATTGAGATGAATGGACAGAAAATTGAAA 481
.|||.||.|.||.||.||.||.|||||.||.|||||.||.||.||.||.|
BPUM_2155___s 426 CATTCAATCAGGGGATATGATCATTGAAATTAATGGTCAAAAGATGGAGA 475
BSNT_03613___ 482 AAATGAATGATGTAGCCCCATTTATTCAAAAGGCTGGGAAAACTGGTGAA 531
|||||||.||..|..||||||||||.||.||.||.||.|||||.||||||
BPUM_2155___s 476 AAATGAACGACCTCACCCCATTTATCCAGAAAGCAGGAAAAACAGGTGAA 525
BSNT_03613___ 532 TC-TTTAGATTTACTGATCAAACGTGATAAACAGAAAA----TCAAAACG 576
.| .||.| ||||||.||.|||.|.| |.||.|||| ||||| .
BPUM_2155___s 526 ACGCTTCG-TTTACTCATAAAAAGAG---ACCATAAAACCTTTCAAA--C 569
BSNT_03613___ 577 AAGCTGATC-CCAGAAAAGGATGAAGGAGAAGGCAAATACAGAATCGGGT 625
||..|.|.| ||.|.|||.||||.|.|.|||||||..||..||||.||..
BPUM_2155___s 570 AACATTAACACCCGCAAAAGATGCAAGTGAAGGCACGTATCGAATTGGTC 619
BSNT_03613___ 626 TATATATCAGAGATTCTGCTGCCGGCATCGGCACTATGACCTTTTATGAA 675
|.||.||..|||||||.||.||.||.||||||||.||||||||.||||||
BPUM_2155___s 620 TTTACATTCGAGATTCCGCAGCAGGAATCGGCACGATGACCTTCTATGAA 669
BSNT_03613___ 676 CCGAAAA----CAAAAAAATACGGAGCACTTGGCCACGTGATTTCCGATA 721
|| | |.||||||||.||.||.|||||.||.|||||||||||.|
BPUM_2155___s 670 CC----ATCTTCTAAAAAATATGGTGCCCTTGGGCATGTGATTTCCGACA 715
BSNT_03613___ 722 TGGACACAAAGAAACCAATTGTAGTGGAGAATGGAGAAATCGTTAAATCC 771
||||.|||||.|||||||||||.||.||.|||||.|||||.||.|.|||.
BPUM_2155___s 716 TGGATACAAAAAAACCAATTGTTGTCGACAATGGTGAAATTGTCAGATCA 765
BSNT_03613___ 772 ACTGTAACATCAATTGAAAAAGGGACAGGCGGTAATCCGGGAGAAAAACT 821
||.||||||||.|||||||||||.|||||.||.|||||.|||||||||.|
BPUM_2155___s 766 ACCGTAACATCGATTGAAAAAGGCACAGGAGGCAATCCTGGAGAAAAATT 815
BSNT_03613___ 822 GGCGCGATTTTCCTCAGAACGCAAAACGATCGGGGATATTAACAGAAACA 871
|||..||||.||.||.|||||.||||||||.||||||||...|.|.||||
BPUM_2155___s 816 GGCAAGATTCTCTTCCGAACGAAAAACGATAGGGGATATCTCCCGCAACA 865
BSNT_03613___ 872 GCCCGTTTGGGATTTTCGGCACACTGCATCAGCCGA-----TTCAAAACA 916
|.||.|||||.||.||.|| |.|.|.|.|||| ||.||||..
BPUM_2155___s 866 GTCCATTTGGTATCTTTGG-----TACGTTAACCGAAAAGCTTGAAAATC 910
BSNT_03613___ 917 ACATATCAGATCAAGCATTGCCGGTTGCGTTTTCTACCGAAGTCAAAAAA 966
|..|||||||..||.|..|.||.|||||.||.||.|..|||||.|||.||
BPUM_2155___s 911 ATGTATCAGACAAACCGCTTCCAGTTGCTTTATCAAATGAAGTGAAAGAA 960
BSNT_03613___ 967 GGGCCGGCTGAAATTTTAACCGTTATTGATGATGACAAAGTAGAAAAATT 1016
|||||.||.|||||||||||.|||.|.|||.||||.|||||.||.||.||
BPUM_2155___s 961 GGGCCAGCAGAAATTTTAACTGTTGTCGATCATGATAAAGTGGAGAAGTT 1010
BSNT_03613___ 1017 CGATATTGAAATCGTTAGCACAACGCCGCAAAAATTCCCTGCGACAAAAG 1066
.||||||.|.|||||.|||||.||.|||||||||||.||.||.|||||||
BPUM_2155___s 1011 TGATATTAAGATCGTCAGCACGACTCCGCAAAAATTTCCGGCAACAAAAG 1060
BSNT_03613___ 1067 GAATGGTGTTGAAAATTACCGATCCAAGGCTGTTGAAAG--AAACAGGAG 1114
|.|||||.||.||..|.||.||| .||..|.||..||| ||||.||.|
BPUM_2155___s 1061 GGATGGTATTAAAGGTAACAGAT--GAGCGTCTTCTAAGTAAAACGGGCG 1108
BSNT_03613___ 1115 GCATCGTACAGGGGATGAGCGGAAGTCCGATTATTCAAAATGGAAAAGTG 1164
|.|||||.||.||.|||||||||||.|||||.||.|||||.||||||||.
BPUM_2155___s 1109 GTATCGTCCAAGGCATGAGCGGAAGCCCGATCATCCAAAACGGAAAAGTC 1158
BSNT_03613___ 1165 ATCGGTGCTGTCACCCATGTATTTGTAAATGACCCGACAAGCGGCTACGG 1214
|||||.||.||||||||.||||||||.|||||||||||.|||||||||||
BPUM_2155___s 1159 ATCGGGGCGGTCACCCACGTATTTGTCAATGACCCGACCAGCGGCTACGG 1208
BSNT_03613___ 1215 TGTTCATATTGAATGGATGCTGTCAGAAGCAGGAATCGATATTTACGGAA 1264
.||.||.||||||||||||||||||||||||||.|||.||.||||...||
BPUM_2155___s 1209 CGTACACATTGAATGGATGCTGTCAGAAGCAGGCATCAATCTTTATCAAA 1258
BSNT_03613___ 1265 AA---GAAAAAGCAAGCTGA 1281
|| .||||||||||||||
BPUM_2155___s 1259 AAAACAAAAAAGCAAGCTGA 1278
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