Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03617 and BPUM_2158
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:09
# Commandline: needle
# -asequence dna-align/BSNT_03617.1.24716.seq
# -bsequence dna-align/BPUM_2158___yqxC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03617-BPUM_2158___yqxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03617-BPUM_2158___yqxC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03617
# 2: BPUM_2158___yqxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 883
# Identity: 521/883 (59.0%)
# Similarity: 521/883 (59.0%)
# Gaps: 182/883 (20.6%)
# Score: 1643.5
#
#
#=======================================
BSNT_03617 0 -------------------------------------------------- 0
BPUM_2158___y 1 ATGACATCAAAGAAAGAACGACTTGACGTTTTATTAGTCGAACAAGGACT 50
BSNT_03617 0 -------------------------------------------------- 0
BPUM_2158___y 51 AATGGAAACGAGAGAGAAAGCAAAGCGTGCCATTATGGCAGGGATCGTTT 100
BSNT_03617 1 -----------------TTGGACAAGCCTGGAGAAAAAATTGACCGCGAC 33
|||||.||.||.|||||.|||||||..||.||.
BPUM_2158___y 101 ACTCAAATGAAAACCGTTTGGATAAACCAGGAGAGAAAATTGCTCGTGAT 150
BSNT_03617 34 CTTCCGTTAACCGTTAAAGGAAACCCGCTGAGGTATGTGAGCAGGGGCGG 83
...|||.|.||.||.|||||.|||||.||||..|||||||||.|.|||||
BPUM_2158___y 151 ACACCGCTCACTGTGAAAGGGAACCCTCTGAAATATGTGAGCCGCGGCGG 200
BSNT_03617 84 CTTAAAGCTCGAAAAAGCGTTGAAGGAATTTCCCGTCT----CTGTCAAG 129
.||||||||.|||||||||.|.||.||||| ||.|| |..|.|||
BPUM_2158___y 201 ATTAAAGCTAGAAAAAGCGCTAAAAGAATT---CGACTTAACCGTTGAAG 247
BSNT_03617 130 GATAAAATTA-TGATTGATATTGGCTCCTCCACCGGCGGTTTTACGGACT 178
| .|||||| |.|||||||||||.||.||.||.||.||.|||||.||.|
BPUM_2158___y 248 G--GAAATTACTAATTGATATTGGTTCATCAACAGGTGGATTTACAGATT 295
BSNT_03617 179 GCGCTTTGCAAAATGGAGC---TAAACAGTCATACGCTGTGGATGTAGGC 225
|.|||.|.|||||.||||| .||| |||||.|||||.|||||.|||
BPUM_2158___y 296 GTGCTCTTCAAAACGGAGCAGTCAAA---TCATATGCTGTTGATGTTGGC 342
BSNT_03617 226 TATAATCAGCTTGCGTGGAAGCTCAGACAGGATGAACGGGTCGTCGTGAT 275
||.|||||||||||||||||..|.||.||||||||..|||||.|.||.||
BPUM_2158___y 343 TACAATCAGCTTGCGTGGAAATTAAGGCAGGATGACAGGGTCATTGTCAT 392
BSNT_03617 276 GGAACGGACGAACTTTCGTTATGCAACACCGGCAGACTTTACAAAGGGCA 325
|||.||.||.|||||.|||.||.|....||.|||||.|||||..|.||..
BPUM_2158___y 393 GGAGCGCACCAACTTCCGTCATTCTGTCCCAGCAGATTTTACTGATGGAC 442
BSNT_03617 326 TGCCGGAGTTTGCCACAATTGATGTGTCCTTTATTTCACTGCGGCTCATC 375
||||.||..|.||..||||||||||.||.|||||||||||....|||||.
BPUM_2158___y 443 TGCCAGAAGTGGCGTCAATTGATGTCTCTTTTATTTCACTTAAACTCATT 492
BSNT_03617 376 CTGCCTGTCCT---AAGGACTTTGCTCGTACCGGGCAGCGACTGCATGGC 422
|||||.| || |||.||.|| ||.||.||.|||.|.|||||.||.||
BPUM_2158___y 493 CTGCCGG--CTTTAAAGCACATT-CTTGTCCCAGGCGGAGACTGTATTGC 539
BSNT_03617 423 TCTAGTTAAGCCTCAGTTTGAAGCGGGACGGGAATCCGTCGGCAAAAAAG 472
.||.||.||||||||.||||||||.||..|.||....||.||.|||||||
BPUM_2158___y 540 ACTCGTCAAGCCTCAATTTGAAGCAGGCAGAGAGCTTGTTGGTAAAAAAG 589
BSNT_03617 473 GGATTGTCAGAGATCCTAAAGTGCATGCTGATGTGCT-CAAG---CGAAT 518
|.||.||..||||.||....||.||...||.|||.|| .||| .||||
BPUM_2158___y 590 GCATCGTACGAGAACCGTCTGTCCACCTTGGTGTACTGGAAGAGATGAAT 639
BSNT_03617 519 GATCAGTTTTTCTGCCGCTGAAGGCTATATATGTAAAGGCT-TGTCATTT 567
|| .|||.||||....||||||||| .||||.||||.| |.||||||
BPUM_2158___y 640 GA----ATTTGCTGCAAAAGAAGGCTAT-GATGTGAAGGATGTCTCATTT 684
BSNT_03617 568 TCTCCAATCACTGGAGGAGACGGAAATATTGAGTTTCTCCTTCATTT--- 614
||.||.||.|||||.||.|||||.|||||||||||.||.||.|||||
BPUM_2158___y 685 TCGCCTATTACTGGCGGTGACGGGAATATTGAGTTCCTGCTCCATTTAAA 734
BSNT_03617 615 GCATTGGCCGGGAGAGGGACAGGATGGCCAGGAGCTGCCG------GAA- 657
||.|...||.|...|.|.|.||.||| |||..||.||| |||
BPUM_2158___y 735 GCTTCATCCCGATCAAGAAGAGAATG---AGGCACTTCCGGTTTCAGAAC 781
BSNT_03617 658 --GAAGAGATCATGCGCGTTGTAGAAGAAGCACATAAGACGTTAAAAGAA 705
|||.||||| ||..|.|||||.|||...|..||.||||||
BPUM_2158___y 782 TTGAAAAGATC---------GTCAAGGAAGCCCATTCTATATTGAAAGAA 822
BSNT_03617 706 AA-AAAAGCAG--ATGTACCGG------AATAA 729
|| ||||.||| .||..|||| .||.|
BPUM_2158___y 823 AAGAAAAACAGTCCTGAGCCGGCTGACACATGA 855
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