Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03621 and BPUM_2160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:09
# Commandline: needle
# -asequence dna-align/BSNT_03621___yqiD.1.24716.seq
# -bsequence dna-align/BPUM_2160___yqiD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03621___yqiD-BPUM_2160___yqiD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03621___yqiD-BPUM_2160___yqiD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03621___yqiD
# 2: BPUM_2160___yqiD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 950
# Identity: 618/950 (65.1%)
# Similarity: 618/950 (65.1%)
# Gaps: 118/950 (12.4%)
# Score: 1871.0
#
#
#=======================================
BSNT_03621___ 1 GTGACAAATAAATT-AACGAGCTTTCTGGCGGAC----CGGAAAAAAACA 45
|||||||.|||.|| ||.||..||| ..|| ||.|||.|.||.
BPUM_2160___y 1 GTGACAAGTAATTTAAATGAATTTT-----TAACAACACGAAAACAGACC 45
BSNT_03621___ 46 ATTGAAAATCAGCTTTCTGTCTATA----CAGAAAAGCTTGA-TATGCCG 90
||.|||.||.| |||.|.|..||| |||.|| |||| .||.||
BPUM_2160___y 46 ATCGAAGATTA--TTTATTTACATATGTTCAGGAA---TTGACGATTCC- 89
BSNT_03621___ 91 GACTCATTAAA-----GAAA---TCTATGCTATATTCTCTACAGGCCGGC 132
|||| |||| ||||||||.|||||.||..|.||.|||
BPUM_2160___y 90 -------TAAAGACCTGAAATCTTCTATGCTCTATTCACTTAAAGCGGGC 132
BSNT_03621___ 133 GGAAAGCGGTTGCGGCCTCTGATTGTACTGGCTGTTTTAAATGCATATGG 182
||.||..||.|.||.|||.|..|.||.||.|||.||.|||||||.||.||
BPUM_2160___y 133 GGGAAAAGGCTTCGACCTGTTCTCGTTCTTGCTCTTCTAAATGCCTACGG 182
BSNT_03621___ 183 AAAAAGCGAAAAAGACGGCATTCCGGTGGGCTGTGCTGTCGAAATGATTC 232
.||||..|||.|||||||.||.||.||.||||||||.||.||.|||||||
BPUM_2160___y 183 TAAAAATGAAGAAGACGGTATACCTGTCGGCTGTGCGGTGGAGATGATTC 232
BSNT_03621___ 233 ACACGTATTCGTTAATTCATGATGATCTTCCATGCATGGATGATGACGAT 282
|.||||||||.||.||.|||||.||.|||||.||.|||||.|||||.||.
BPUM_2160___y 233 ATACGTATTCATTGATACATGACGACCTTCCTTGTATGGACGATGATGAC 282
BSNT_03621___ 283 TTGCGCCGCGGGAAGCCGACAAACCATAAAGTGTTTGGTGAAGCGACGGC 332
.|.||..|.||.||.|||||.||.||||||||||..||.|||||.||.||
BPUM_2160___y 283 CTTCGTAGAGGAAAACCGACGAATCATAAAGTGTACGGGGAAGCAACAGC 332
BSNT_03621___ 333 AGTATTAGCGGGTGACGGGCTGCTCACAGAAAGCTTTAAGCTGATTACCT 382
.||..|.||||||||.|..||..|.|||||.|||||....||||||||.|
BPUM_2160___y 333 GGTTCTCGCGGGTGATGCCCTTTTAACAGAGAGCTTCCGTCTGATTACAT 382
BSNT_03621___ 383 CCCACGTGTC-AGACGAG-GTGTCAGCAG---AAAAGCGCCTGCGGCTTG 427
|.||..|||| || .|| ||.||.||.| ||||| ||..|..|||
BPUM_2160___y 383 CACAGCTGTCTAG--CAGCGTTTCTGCTGACAAAAAG---CTCAGAATTG 427
BSNT_03621___ 428 TGAATGAAC---TGATTTCAGCGGCAGGCACCG-AAGGCATGGTCGGTGG 473
|..||||.| |.|..|||||||..| || .|||.|||||.||.||
BPUM_2160___y 428 TAGATGAGCTTGTAAAGTCAGCGGGTG----CGCTAGGAATGGTTGGCGG 473
BSNT_03621___ 474 GCAAGTAGCTGATATGGAAGC---GGAAAACCGACAAGTCACGCTTGAAG 520
.|||.|.|.|||.|||||||| |.|||| ||||||..||||||..|
BPUM_2160___y 474 TCAATTTGATGACATGGAAGCAGAGCAAAA---ACAAGTATCGCTTGCTG 520
BSNT_03621___ 521 AGCTCGAATCCATTCATGAACGGAAAACTGCCAAGCTCCTTGGCTTTTGT 570
|.||.||||.||||||.|..||.|||||.|..|||||.||....||..|.
BPUM_2160___y 521 AACTAGAATACATTCACGCCCGTAAAACAGGAAAGCTTCTCACATTCAGC 570
BSNT_03621___ 571 GTAATCGCCGGTGCTATTTTGGCTGATGCGCCTGAGGAAGACATTGAAAC 620
||....||.|||||.||..||||.|..||..|.||.||.||.||.||||.
BPUM_2160___y 571 GTCGCAGCTGGTGCAATGCTGGCAGGAGCATCAGATGACGATATCGAAAA 620
BSNT_03621___ 621 ACT--GCGTACCTTCAGCAGCCACATTGGAATCGGATTTCAAATCAGAGA 668
.|| |.|.| ||||||...||.|||||.||.|..|||||||||.|.||
BPUM_2160___y 621 GCTAAGGGAA--TTCAGCTATCATATTGGCATTGCGTTTCAAATCCGTGA 668
BSNT_03621___ 669 CGATATTTTAGATTTAGAAGGCAGTGAAGAGAAAATCGGCAAACGTGTCG 718
.||||||||||||.|.|||||.||.||||||||||||||.|||||.||||
BPUM_2160___y 669 TGATATTTTAGATCTCGAAGGAAGCGAAGAGAAAATCGGAAAACGGGTCG 718
BSNT_03621___ 719 GCTCGGATACCACAAATGACAAATCGACATACCCGTCGCTT--------C 760
||||.|||||..|||||||.||.||||||||.||.| ||| |
BPUM_2160___y 719 GCTCTGATACAGCAAATGAAAAGTCGACATATCCTT--CTTTATTAACGC 766
BSNT_03621___ 761 TTTCATTGGAAGGGGCCAAACATAAATTGGATGTTCATAT---------A 801
|||| |||.||.|||.|.|||.||||||..||.|| |
BPUM_2160___y 767 TTTC------AGGAGCAAAAGAAAAACTGGATGAGCACATCACGCGTGCA 810
BSNT_03621___ 802 AAAGAGGCGAAGCGATTGATCGGCGGACTCTC---TCTTCAAAAAGACC- 847
||||| .|||| |||| |||.|||..|||.|
BPUM_2160___y 811 AAAGA------------AATCG------TCTCAAATCTCCAATTAGAGCA 842
BSNT_03621___ 848 -----TTTTATATGAGCTT-TGTGATTTAATTGCGGCAAGAGATCACTAA 891
|..|..||| |.|| ||||||.|||||||..||||||||||.|||
BPUM_2160___y 843 GCAATTGCTGCATG-GTTTATGTGATCTAATTGCCTCAAGAGATCATTAA 891
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