Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03630 and BPUM_2165

See Amino acid alignment / Visit BSNT_03630 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:10
# Commandline: needle
#    -asequence dna-align/BSNT_03630___yqhY.1.24716.seq
#    -bsequence dna-align/BPUM_2165___yqhY.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03630___yqhY-BPUM_2165___yqhY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03630___yqhY-BPUM_2165___yqhY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03630___yqhY
# 2: BPUM_2165___yqhY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 425
# Identity:     300/425 (70.6%)
# Similarity:   300/425 (70.6%)
# Gaps:          34/425 ( 8.0%)
# Score: 1005.0
# 
#
#=======================================

BSNT_03630___      1 ATGAAAGACAACAGCTTGCTTAAAATGGA---TCACGAAGATACGCATTT     47
                     .||..|||.||||..||||||.|||||.|   |.|.||||||   ||.||
BPUM_2165___y      1 GTGTCAGAAAACAATTTGCTTGAAATGAACCTTGATGAAGAT---CAATT     47

BSNT_03630___     48 GGGTAAGGTTGAGATTGCACCGGAGGTCATTGAGGTCATTGCCGGCATTG     97
                     .||.||.||..|.||||||||.||.||.|||||.||||||||.||.||.|
BPUM_2165___y     48 AGGAAAAGTGCAAATTGCACCAGAAGTGATTGAAGTCATTGCTGGGATCG     97

BSNT_03630___     98 CAGCATCAGAAGTTGATGGGGTTGCCGAAATGCGCGGAAACTTTGCGACA    147
                     |.||.||||||||.||.||..||||||||||||||||.||.||.||..|.
BPUM_2165___y     98 CCGCTTCAGAAGTCGAAGGCATTGCCGAAATGCGCGGCAATTTCGCTGCT    147

BSNT_03630___    148 GGCGTCGTTGAGCGCTTTGGCAAAGTGAATCATGGCAAAGGTGTCAAAGT    197
                     |..||.|..||.||.|||||.|||...|||||..|.||||||||.|||||
BPUM_2165___y    148 GATGTAGCAGAACGTTTTGGTAAAAAAAATCACCGTAAAGGTGTGAAAGT    197

BSNT_03630___    198 CGACCTGGCGGAAGACGGAATTACGATCGATGTATACTGTGTCGTTACAT    247
                     .||..|..|.||.||.||.||.||.|||||||||||.|||||..||..||
BPUM_2165___y    198 AGATGTCTCTGATGAAGGCATCACAATCGATGTATATTGTGTGATTGAAT    247

BSNT_03630___    248 TTGGCGTTTCGATTCCGAAAGTTGCAGCATCC------GTTCAGGAAAAC    291
                     |||||.|.||.|||||.||.||      ||||      ||.||.|||||.
BPUM_2165___y    248 TTGGCCTATCCATTCCAAAGGT------ATCCACTGCTGTACAAGAAAAT    291

BSNT_03630___    292 ATTCGTCAAAC-CTTATTAAATATGAC-GTCTCTTTCGATTAACGAGATC    339
                     ||||||||||| ||| ||.||.||||| |.|| |..|||||||.||.|||
BPUM_2165___y    292 ATTCGTCAAACTCTT-TTGAACATGACTGCCT-TAACGATTAATGAAATC    339

BSNT_03630___    340 AATATTCACATCGTCGGCATTCAATTTGACACAAA---AGCCCA---AGA    383
                     ||||||||..||||.||.|||||||||||.|||||   |||..|   .||
BPUM_2165___y    340 AATATTCATGTCGTTGGTATTCAATTTGATACAAAGTCAGCTGAGGCTGA    389

BSNT_03630___    384 AGTCCAAATCGACGAAGAAATGTAA    408
                     |||  |.|||    |||||||||||
BPUM_2165___y    390 AGT--AGATC----AAGAAATGTAA    408


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