Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03641 and BPUM_2170

See Amino acid alignment / Visit BSNT_03641 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:10
# Commandline: needle
#    -asequence dna-align/BSNT_03641___spoIIIAF.1.24716.seq
#    -bsequence dna-align/BPUM_2170___spoIIIAF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03641___spoIIIAF-BPUM_2170___spoIIIAF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03641___spoIIIAF-BPUM_2170___spoIIIAF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03641___spoIIIAF
# 2: BPUM_2170___spoIIIAF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 719
# Identity:     428/719 (59.5%)
# Similarity:   428/719 (59.5%)
# Gaps:         184/719 (25.6%)
# Score: 1240.0
# 
#
#=======================================

BSNT_03641___      1 ATGAGTTTTTTAACGGAATGGCTTACCACCATCGTGTTGTTTATCCTATT     50
                     .||||||||.|.|||||||||.|.||.|..||..|..|.||||||.||||
BPUM_2170___s      1 TTGAGTTTTCTCACGGAATGGATCACAAGTATTATTCTCTTTATCTTATT     50

BSNT_03641___     51 TGCAATTGTGATTGATATGCTGCTGCCGAGCTCCAGCATGCAAAAGTACG    100
                     |||.|||||.||||||.|.|||||.||.|..||.|||||||||||.||.|
BPUM_2170___s     51 TGCGATTGTCATTGATCTTCTGCTTCCTAATTCAAGCATGCAAAAATATG    100

BSNT_03641___    101 CAAAAATGGTAGTCAGCCTGCTATTGATTGTCGTCATGCTTACGCCGATT    150
                     |.||||||||.||||||||.||.||||||||.||.|||||.|..||||||
BPUM_2170___s    101 CCAAAATGGTCGTCAGCCTCCTGTTGATTGTGGTGATGCTCAATCCGATT    150

BSNT_03641___    151 TTTAAACT---TTTCAAGACAGACCCCGAAGTCATCTTTGAATACCTCAC    197
                     |||  .||   |||| .|.|||||||.||  .||..|||       ||.|
BPUM_2170___s    151 TTT--GCTTTATTTC-GGGCAGACCCTGA--CCAAATTT-------TCTC    188

BSNT_03641___    198 AAAA------AACGGGCAG------TCAGAGTCTGCCGACATAAAAAATC    235
                     |.||      ||.|||.||      .||.||||.|..||.||||||||||
BPUM_2170___s    189 AGAATTGATGAAGGGGAAGGAAGAAGCACAGTCAGAAGAAATAAAAAATC    238

BSNT_03641___    236 AAATCAATTCAAAAAAAATAGAAATACAAGCTTCCCAGCGCGCATATATT    285
                     |.||.||||.|.||||||.||||||||||||.||.|||||.|||||||||
BPUM_2170___s    239 AGATGAATTTAGAAAAAAAAGAAATACAAGCCTCTCAGCGTGCATATATT    288

BSNT_03641___    286 CTAGAAG-AAATGGCTGTCCAACT--AAAAAAG---AAA----------G    319
                     .|| ||| ||||||||||||||||  |||||||   |||          |
BPUM_2170___s    289 TTA-AAGCAAATGGCTGTCCAACTAGAAAAAAGCGCAAAGGAGCCACTGG    337

BSNT_03641___    320 CGGAGGAGAGATTCAGTCATGATGAATATAAA----GTAGGCCGCATCAA    365
                     .|.|||||||.|         |.||| ||.||    ||||         |
BPUM_2170___s    338 AGAAGGAGAGCT---------ACGAA-ATGAAACACGTAG---------A    368

BSNT_03641___    366 ACTCACGGCAGGAGAAAAG---GTAGATTCAGAA-------GAGGAT---    402
                     |.|...|||||..|||.||   .|.|| ||||||       |.||||   
BPUM_2170___s    369 AGTGTTGGCAGATGAAGAGCACCTGGA-TCAGAATATGGAGGCGGATCAA    417

BSNT_03641___    403 ------ATTAAAACAATCAGCGTGTATATGGCCCCG-TC--------TTC    437
                           ||.|||.||.|         |.|..||||| ||        |.|
BPUM_2170___s    418 TTTCGCATCAAAGCAGT---------TCTTTCCCCGCTCACAGGTGATGC    458

BSNT_03641___    438 TGAAAAAACGGT-CCAAACGGTCGCGCCGGTCCACATTGA----TACAGA    482
                     ||.|.||||||| .||||          |||..|||||||    |.||| 
BPUM_2170___s    459 TGTAGAAACGGTGGCAAA----------GGTGGACATTGATCTCTCCAG-    497

BSNT_03641___    483 TCATGCATACGTAACAAAAG-----AAGCAGCCGAA--------CAAAAA    519
                                  .||||||     |||| ||.|||        ||||.|
BPUM_2170___s    498 -------------GCAAAAGGAGAAAAGC-GCTGAATCTTCTAGCAAAGA    533

BSNT_03641___    520 GA-------AGCCAAACAGATACAAACGCAGCTCGCGGACATTTGGGAAA    562
                     ||       .|..|||.|||         ||||.|||||..|||||  ||
BPUM_2170___s    534 GATCAAGAGGGTGAAAGAGA---------AGCTTGCGGATGTTTGG--AA    572

BSNT_03641___    563 T-CGGAAG---TGAGAAAATTACGGTTCATATGGAAGGCGGGGAGAGTGT    608
                     | ||  ||   ||||.|.|||.||.|..|.||.||     ||||| |||.
BPUM_2170___s    573 TACG--AGTCCTGAGCACATTGCGCTGAACATTGA-----GGGAG-GTGA    614

BSNT_03641___    609 CG--GCA----ATGAATAA    621
                     ||  |||    ||||||||
BPUM_2170___s    615 CGCAGCAGATCATGAATAA    633


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.